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Zhu2007 Calcium Transcription Factor Lab

About lab

calcium-modulated transcription factor activation. This a model from the article: A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations. It can be used to explore generegulation zhu2007 tf modulated by calcium dynamics and compare simulation behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagezhu2007-calcium-transcription-factor-lab
Created2026-05-15
Updated2026-05-15
generegulationsbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "active_transcription_factor",
        "maps_to": "zhu2007_calcium_transcription_factor.active_transcription_factor"
      },
      {
        "name": "stored_calcium",
        "maps_to": "zhu2007_calcium_transcription_factor.stored_calcium"
      },
      {
        "name": "cytoplasmic_calcium",
        "maps_to": "zhu2007_calcium_transcription_factor.cytoplasmic_calcium"
      },
      {
        "name": "state",
        "maps_to": "zhu2007_calcium_transcription_factor.state"
      },
      {
        "name": "summary",
        "maps_to": "zhu2007_calcium_transcription_factor.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "zhu2007_calcium_transcription_factor.species_labels"
      }
    ]
  },
  "title": "Zhu2007 Calcium Transcription Factor Lab",
  "models": [
    {
      "path": "owned/models/zhu2007_calcium_transcription_factor",
      "alias": "zhu2007_calcium_transcription_factor",
      "parameters": {
        "model_path": "data/BIOMD0000000166.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/zhu2007_calcium_transcription_factor"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.zhu2007_calcium_transcription_factor_active_transcription_factor"
      ],
      "from": "zhu2007_calcium_transcription_factor.active_transcription_factor"
    },
    {
      "to": [
        "visualisation.zhu2007_calcium_transcription_factor_stored_calcium"
      ],
      "from": "zhu2007_calcium_transcription_factor.stored_calcium"
    },
    {
      "to": [
        "visualisation.zhu2007_calcium_transcription_factor_cytoplasmic_calcium"
      ],
      "from": "zhu2007_calcium_transcription_factor.cytoplasmic_calcium"
    },
    {
      "to": [
        "visualisation.zhu2007_calcium_transcription_factor_state"
      ],
      "from": "zhu2007_calcium_transcription_factor.state"
    },
    {
      "to": [
        "visualisation.zhu2007_calcium_transcription_factor_summary"
      ],
      "from": "zhu2007_calcium_transcription_factor.summary"
    },
    {
      "to": [
        "visualisation.zhu2007_calcium_transcription_factor_species_labels"
      ],
      "from": "zhu2007_calcium_transcription_factor.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "calcium-modulated transcription factor activation. This a model from the article: A theoretical study on activation of transcription factor modulated by intracellular Ca2+ oscillations. It can be used to explore generegulation zhu2007 tf modulated by calcium dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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