Smith2011_HumanHeartMitochondrian_MetabolicModel Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_c00000cyto_biomass",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.initial_c00000cyto_biomass",
        "description": "Initial condition for c00000cyto biomass. Maps to bundled SBML symbol `C00000Cyto`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      },
      {
        "name": "initial_c00001cyto_h2o",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.initial_c00001cyto_h2o",
        "description": "Initial condition for c00001cyto h2o. Maps to bundled SBML symbol `C00001Cyto`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      },
      {
        "name": "initial_c00002cyto_atp",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.initial_c00002cyto_atp",
        "description": "Initial condition for c00002cyto atp. Maps to bundled SBML symbol `C00002Cyto`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      },
      {
        "name": "initial_c00003cyto_nad",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.initial_c00003cyto_nad",
        "description": "Initial condition for c00003cyto nad. Maps to bundled SBML symbol `C00003Cyto`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      },
      {
        "name": "initial_c00004cyto_nadh",
        "units": "native SBML value",
        "default": 0,
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.initial_c00004cyto_nadh",
        "description": "Initial condition for c00004cyto nadh. Maps to bundled SBML symbol `C00004Cyto`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from Tellurium setup-time value because no explicit SBML initial value was available."
      }
    ],
    "outputs": [
      {
        "name": "c00000cyto_biomass",
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.c00000cyto_biomass"
      },
      {
        "name": "c00001cyto_h2o",
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.c00001cyto_h2o"
      },
      {
        "name": "c00002cyto_atp",
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.c00002cyto_atp"
      },
      {
        "name": "c00003cyto_nad",
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.c00003cyto_nad"
      },
      {
        "name": "c00004cyto_nadh",
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.c00004cyto_nadh"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.observable_labels"
      }
    ]
  },
  "title": "Smith2011_HumanHeartMitochondrian_MetabolicModel Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model",
      "alias": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model",
      "parameters": {
        "model_path": "data/MODEL1106160000.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model_observable_values"
      ],
      "from": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model_run_summary"
      ],
      "from": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model_observable_labels"
      ],
      "from": "metabolism_sbml_smith2011_humanheartmitochondrian_metabolicmodel_model1106160000_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This model is from the article: A metabolic model of the mitochondrion and its use in modelling diseases of the tricarboxylic acid cycle. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}