About lab
This is the 2 state model of Myosin V movement described in the article: A simple kinetic model describes the processivity of myosin-v. It can be used to explore systemsbiology kolomeisky2003 myosinv processivity BioModels0000000305 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
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Completed0
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Metadata
Packagekolomeisky2003-myosinv-processivity-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_atp",
"label": "Initial Model State ATP",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.initial_model_state_atp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ATP`."
},
{
"name": "initial_model_state_adp",
"label": "Initial Model State ADP",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.initial_model_state_adp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ADP`."
},
{
"name": "initial_model_state_s0",
"label": "Initial Model State S0",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.initial_model_state_s0",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S0`."
},
{
"name": "initial_model_state_s1",
"label": "Initial Model State S1",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.initial_model_state_s1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `S1`."
},
{
"name": "initial_model_state_pi",
"label": "Initial Model State Pi",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.initial_model_state_pi",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pi_`."
},
{
"name": "initial_fwd_step2",
"label": "Initial Fwd Step2",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.initial_fwd_step2",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `fwd_step2`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.species_labels"
},
{
"name": "atp",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.atp"
},
{
"name": "adp",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.adp"
},
{
"name": "model_state_s0",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.model_state_s0"
},
{
"name": "model_state_s1",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.model_state_s1"
},
{
"name": "model_state_pi",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.model_state_pi"
},
{
"name": "fwd_step2",
"maps_to": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.fwd_step2"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Kolomeisky2003 Myosinv Processivity Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model",
"alias": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model_state"
],
"from": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model_summary"
],
"from": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model_species_labels"
],
"from": "systemsbiology_sbml_kolomeisky2003_myosinv_processivity_biomd0000000305_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This is the 2 state model of Myosin V movement described in the article: A simple kinetic model describes the processivity of myosin-v. It can be used to explore systemsbiology kolomeisky2003 myosinv processivity BioModels0000000305 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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