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Hayer2005 Ampar Camkii Strong Coupling Lab

About lab

This is a model of tight coupling between the AMPAR trafficking bistability, and the CaMKII autophosphorylation bistability. In this model, the CaMKII activity is self sustaining only when AMPAR is tu.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagehayer2005-ampar-camkii-strong-coupling-lab
Created2026-05-17
Updated2026-05-17
signalingsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ac_slash_atp",
        "label": "Initial Ac Slash ATP",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.initial_ac_slash_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `AC_slash_ATP`."
      },
      {
        "name": "initial_act_ca_mkii_minus_psd",
        "label": "Initial Act Ca Mkii Minus Psd",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.initial_act_ca_mkii_minus_psd",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `actCaMKII_minus_PSD`."
      },
      {
        "name": "initial_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
        "label": "Initial Act Ca Mkii Minus Psd Slash Ca Mkii Slash Ca Mkii Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.initial_act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `actCaMKII_minus_PSD_slash_CaMKII_slash_CaMKII_cplx`."
      },
      {
        "name": "initial_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
        "label": "Initial Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 4 Sbc Slash Ca Mkii Sbo 4 Sbc Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.initial_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `actCaMKII_minus_PSD_slash_CaMKII_sbo_4_sbc__slash_CaMKII_sbo_4_sbc__cplx`."
      },
      {
        "name": "initial_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
        "label": "Initial Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 8 Sbc Slash Ca Mkii Sbo 8 Sbc Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.initial_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `actCaMKII_minus_PSD_slash_CaMKII_sbo_8_sbc__slash_CaMKII_sbo_8_sbc__cplx`."
      },
      {
        "name": "initial_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
        "label": "Initial Act Ca Mkii Minus Psd Slash Ca Mkii Sbo 12 Sbc Slash Ca Mkii Sbo 12 Sbc Cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.initial_act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `actCaMKII_minus_PSD_slash_CaMKII_sbo_12_sbc__slash_CaMKII_sbo_12_sbc__cplx`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.species_labels"
      },
      {
        "name": "ac_slash_atp",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.ac_slash_atp"
      },
      {
        "name": "act_ca_mkii_minus_psd",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.act_ca_mkii_minus_psd"
      },
      {
        "name": "act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.act_ca_mkii_minus_psd_slash_ca_mkii_slash_ca_mkii_cplx"
      },
      {
        "name": "act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.act_ca_mkii_minus_psd_slash_ca_mkii_sbo_4_sbc_slash_ca_mkii_sbo_4_sbc_cplx"
      },
      {
        "name": "act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.act_ca_mkii_minus_psd_slash_ca_mkii_sbo_8_sbc_slash_ca_mkii_sbo_8_sbc_cplx"
      },
      {
        "name": "act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx",
        "maps_to": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.act_ca_mkii_minus_psd_slash_ca_mkii_sbo_12_sbc_slash_ca_mkii_sbo_12_sbc_cplx"
      }
    ]
  },
  "tags": [
    "signaling",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Hayer2005 Ampar Camkii Strong Coupling Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model",
      "alias": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model_state"
      ],
      "from": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model_summary"
      ],
      "from": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model_species_labels"
      ],
      "from": "systemsbiology_sbml_hayer2005_ampar_camkii_strong_coupling_model9087255381_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This is a model of tight coupling between the AMPAR trafficking bistability, and the CaMKII autophosphorylation bistability. In this model, the CaMKII activity is self sustaining only when AMPAR is tu.",
  "schema_version": "2.0"
}

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