About lab
We undertake a mathematical investigation of a model for the generation of thrombin, an enzyme central to haemostatic blood coagulation, as well as to thrombotic disorders, that is the end product of. It can be used to explore systemsbiology dunster2016 nondimensional coagulation BioModels0000000925 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
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Metadata
Packagedunster2016-nondimensional-coagulation
Created2026-05-17
Updated2026-06-13
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_prothrombin_ii",
"label": "Initial Prothrombin Ii",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.initial_prothrombin_ii",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Prothrombin__II`."
},
{
"name": "initial_xa_l",
"label": "Initial Xa L",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.initial_xa_l",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Xa_L`."
},
{
"name": "initial_va_xa_l",
"label": "Initial Va Xa L",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.initial_va_xa_l",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Va_Xa_L`."
},
{
"name": "initial_thrombin_i_ia",
"label": "Initial Thrombin I Ia",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.initial_thrombin_i_ia",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Thrombin__IIa`."
},
{
"name": "initial_prothrombinase_va_xa",
"label": "Initial Prothrombinase Va Xa",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.initial_prothrombinase_va_xa",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Prothrombinase__Va_Xa`."
},
{
"name": "initial_inactive_protein_c",
"label": "Initial Inactive Protein C",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.initial_inactive_protein_c",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Inactive_protein_C`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.species_labels"
},
{
"name": "prothrombin_ii",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.prothrombin_ii"
},
{
"name": "xa_l",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.xa_l"
},
{
"name": "va_xa_l",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.va_xa_l"
},
{
"name": "thrombin_i_ia",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.thrombin_i_ia"
},
{
"name": "prothrombinase_va_xa",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.prothrombinase_va_xa"
},
{
"name": "inactive_protein_c",
"maps_to": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.inactive_protein_c"
}
]
},
"tags": [
"generegulation",
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Dunster2016 Nondimensional Coagulation Lab",
"models": [
{
"path": "models/core",
"alias": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model_state"
],
"from": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model_summary"
],
"from": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model_species_labels"
],
"from": "systemsbiology_sbml_dunster2016_nondimensional_coagulation_model_biomd0000000925_model.species_labels"
}
],
"package": "dunster2016-nondimensional-coagulation",
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"version": "1.0.0",
"description": "We undertake a mathematical investigation of a model for the generation of thrombin, an enzyme central to haemostatic blood coagulation, as well as to thrombotic disorders, that is the end product of. It can be used to explore systemsbiology dunster2016 nondimensional coagulation BioModels0000000925 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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