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Bartholome2007 Mdckii Lab

About lab

SBML model exported from PottersWheel on 2007-09-19 15:35:47. The values for parameters and the inital concentrations of this model where directly provided by the main author: Parameter values paramet.

Runtime

Duration1
Comms Step0.1

Runs

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Completed0
Failed0

Metadata

Packagebartholome2007-mdckii-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_intracellular_bsp",
        "label": "Initial Intracellular Bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.initial_intracellular_bsp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `BSP_cell`."
      },
      {
        "name": "initial_free_intracellular_bsp",
        "label": "Initial Free Intracellular Bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.initial_free_intracellular_bsp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x3`."
      },
      {
        "name": "initial_bound_intracellular_bsp",
        "label": "Initial Bound Intracellular Bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.initial_bound_intracellular_bsp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x4`."
      },
      {
        "name": "initial_apical_bsp",
        "label": "Initial Apical Bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.initial_apical_bsp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x5`."
      },
      {
        "name": "initial_free_basolateral_bsp",
        "label": "Initial Free Basolateral Bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.initial_free_basolateral_bsp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `x1`."
      },
      {
        "name": "initial_total_bsp",
        "label": "Initial Total Bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.initial_total_bsp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `BSP_tot`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.species_labels"
      },
      {
        "name": "intracellular_bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.intracellular_bsp"
      },
      {
        "name": "free_intracellular_bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.free_intracellular_bsp"
      },
      {
        "name": "bound_intracellular_bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.bound_intracellular_bsp"
      },
      {
        "name": "apical_bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.apical_bsp"
      },
      {
        "name": "free_basolateral_bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.free_basolateral_bsp"
      },
      {
        "name": "total_bsp",
        "maps_to": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.total_bsp"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bartholome2007 Mdckii Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model",
      "alias": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model_state"
      ],
      "from": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model_summary"
      ],
      "from": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bartholome2007_mdckii_biomd0000000197_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "SBML model exported from PottersWheel on 2007-09-19 15:35:47. The values for parameters and the inital concentrations of this model where directly provided by the main author: Parameter values paramet.",
  "schema_version": "2.0"
}

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