BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Wein1998 - Mathematical Analysis Antiretroviral Therapy Aimed At Hiv Lab

About lab

Source-faithful physiology lab for Wein, D'Amato, Perelson 1998. Public controls and outputs are mapped to real source symbols for pharmacokinetics.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagewein1998-mathematical-analysis-antiretroviral-therapy-aimed-at-h
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_v1_i",
        "label": "Initial V1 I",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.initial_v1_i",
        "description": "Initial value for V1 I. Maps to source symbol `V1_I`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "virons_per_ml"
        ]
      },
      {
        "name": "initial_v2_i",
        "label": "Initial V2 I",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.initial_v2_i",
        "description": "Initial value for V2 I. Maps to source symbol `V2_I`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "virons_per_ml"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.variable_labels"
      },
      {
        "name": "v1_i",
        "label": "V1 I",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.v1_i",
        "description": "V1 I. Maps to source symbol `V1_I`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "v2_i",
        "label": "V2 I",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.v2_i",
        "description": "V2 I. Maps to source symbol `V2_I`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "virus_strain1_v1",
        "label": "Virus Strain1 V1",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.virus_strain1_v1",
        "description": "Virus Strain1 V1. Maps to source symbol `V1`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "virus_strain2_v2",
        "label": "Virus Strain2 V2",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.virus_strain2_v2",
        "description": "Virus Strain2 V2. Maps to source symbol `V2`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "drug_parameters_p1",
        "label": "Drug Parameters P1",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.drug_parameters_p1",
        "description": "Drug Parameters P1. Maps to source symbol `p1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "drug_parameters_p2",
        "label": "Drug Parameters P2",
        "maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.drug_parameters_p2",
        "description": "Drug Parameters P2. Maps to source symbol `p2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Wein1998 - Mathematical Analysis Antiretroviral Therapy Aimed At Hiv Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model",
      "alias": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model",
      "parameters": {
        "model_path": "data/wein_1998.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model_state"
      ],
      "from": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model_summary"
      ],
      "from": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model_trajectory"
      ],
      "from": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model_variable_labels"
      ],
      "from": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Wein, D'Amato, Perelson 1998. Public controls and outputs are mapped to real source symbols for pharmacokinetics.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.