About lab
Source-faithful physiology lab for Wein, D'Amato, Perelson 1998. Public controls and outputs are mapped to real source symbols for pharmacokinetics.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagewein1998-mathematical-analysis-antiretroviral-therapy-aimed-at-h
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_v1_i",
"label": "Initial V1 I",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.initial_v1_i",
"description": "Initial value for V1 I. Maps to source symbol `V1_I`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"virons_per_ml"
]
},
{
"name": "initial_v2_i",
"label": "Initial V2 I",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.initial_v2_i",
"description": "Initial value for V2 I. Maps to source symbol `V2_I`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"virons_per_ml"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.variable_labels"
},
{
"name": "v1_i",
"label": "V1 I",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.v1_i",
"description": "V1 I. Maps to source symbol `V1_I`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "v2_i",
"label": "V2 I",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.v2_i",
"description": "V2 I. Maps to source symbol `V2_I`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "virus_strain1_v1",
"label": "Virus Strain1 V1",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.virus_strain1_v1",
"description": "Virus Strain1 V1. Maps to source symbol `V1`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "virus_strain2_v2",
"label": "Virus Strain2 V2",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.virus_strain2_v2",
"description": "Virus Strain2 V2. Maps to source symbol `V2`. Units: virons_per_ml. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "drug_parameters_p1",
"label": "Drug Parameters P1",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.drug_parameters_p1",
"description": "Drug Parameters P1. Maps to source symbol `p1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "drug_parameters_p2",
"label": "Drug Parameters P2",
"maps_to": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.drug_parameters_p2",
"description": "Drug Parameters P2. Maps to source symbol `p2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Wein1998 - Mathematical Analysis Antiretroviral Therapy Aimed At Hiv Lab",
"models": [
{
"path": "owned/models/physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model",
"alias": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model",
"parameters": {
"model_path": "data/wein_1998.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model_state"
],
"from": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.state"
},
{
"to": [
"visualisation.physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model_summary"
],
"from": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model_trajectory"
],
"from": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model_variable_labels"
],
"from": "physiology_cellml_wein_d_amato_perelson_1998_weindamatoperelson1998_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Wein, D'Amato, Perelson 1998. Public controls and outputs are mapped to real source symbols for pharmacokinetics.",
"schema_version": "2.0"
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