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Gorlich2003 Rangtp Gradient Lab

About lab

This model represents a concentration gradient of RanGTP across the nuclear envelope. This gradient is generated by distribution of regulators of RanGTPase.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagegorlich2003-rangtp-gradient-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_gtp",
        "label": "Initial Model State Gtp",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.initial_model_state_gtp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GTP`."
      },
      {
        "name": "initial_ran_gdp_cy",
        "label": "Initial Ran Gdp Cy",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.initial_ran_gdp_cy",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RanGDP_cy`."
      },
      {
        "name": "initial_ran_bp1",
        "label": "Initial Ran BP1",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.initial_ran_bp1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RanBP1`."
      },
      {
        "name": "initial_model_state_gdp",
        "label": "Initial Model State Gdp",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.initial_model_state_gdp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `GDP`."
      },
      {
        "name": "initial_ran_gap",
        "label": "Initial Ran Gap",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.initial_ran_gap",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RanGAP`."
      },
      {
        "name": "initial_rcc1",
        "label": "Initial Rcc1",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.initial_rcc1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `RCC1`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.species_labels"
      },
      {
        "name": "gtp",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.gtp"
      },
      {
        "name": "ran_gdp_cy",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.ran_gdp_cy"
      },
      {
        "name": "ran_bp1",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.ran_bp1"
      },
      {
        "name": "gdp",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.gdp"
      },
      {
        "name": "ran_gap",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.ran_gap"
      },
      {
        "name": "rcc1",
        "maps_to": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.rcc1"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Gorlich2003 Rangtp Gradient Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model",
      "alias": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model_state"
      ],
      "from": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model_summary"
      ],
      "from": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model_species_labels"
      ],
      "from": "systemsbiology_sbml_g_rlich2003_rangtp_gradient_biomd0000000192_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model represents a concentration gradient of RanGTP across the nuclear envelope. This gradient is generated by distribution of regulators of RanGTPase.",
  "schema_version": "2.0"
}

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