MODEL2010030003 - Oliveira2020 - Beta-Alanine pathway for 3-hydroxypropionate production from glycerol Lab
About lab
Clean Biosimulant lab for systems signaling model: Oliveira2020 - Beta-Alanine pathway for 3-hydroxypropionate production from glycerol. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemodel2010030003-oliveira2020-beta-alanine-pathway-for-3-hydroxyp
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebicellular-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_coenzyme_a",
"label": "Initial coenzyme A",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.initial_coenzyme_a",
"description": "Initial level of coenzyme A. Maps to SBML symbol `COA`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cysteine",
"label": "Initial cysteine",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.initial_cysteine",
"description": "Initial level of cysteine. Maps to SBML symbol `CYS`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_h2o",
"label": "Initial H2O",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.initial_h2o",
"description": "Initial level of H2O. Maps to SBML symbol `H2O`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "camp",
"label": "cAMP",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.camp",
"description": "cAMP. Maps to SBML symbol `CAMP` and is emitted in native SBML units."
},
{
"name": "accoa",
"label": "ACCOA",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.accoa",
"description": "ACCOA. Maps to SBML symbol `ACCOA` and is emitted in native SBML units."
},
{
"name": "source_defined_aco_state",
"label": "source-defined ACO state",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.source_defined_aco_state",
"description": "source-defined ACO state. Maps to SBML symbol `ACO` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"cellular-signaling"
],
"title": "MODEL2010030003 - Oliveira2020 - Beta-Alanine pathway for 3-hydroxypropionate production from glycerol Lab",
"models": [
{
"path": "owned/models/signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model",
"alias": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model_state"
],
"from": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.state"
},
{
"to": [
"visualisation.signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model_summary"
],
"from": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model_species_labels"
],
"from": "signaling_sbml_oliveira2020_beta_alanine_pathway_for_3_hydroxyp_model2010030003_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Oliveira2020 - Beta-Alanine pathway for 3-hydroxypropionate production from glycerol. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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