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Dupont1992 - Protein Phosphorylation Driven By Intracellular Calcium Lab

About lab

Source-faithful physiology lab for Dupont Goldbeter 1992. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagedupont1992-protein-phosphorylation-driven-by-intracellular-calci
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_wstar",
        "label": "Initial Wstar",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.initial_wstar",
        "description": "Initial value for Wstar. Maps to source symbol `Wstar`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      },
      {
        "name": "initial_cytosol_z",
        "label": "Initial Cytosol Z",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.initial_cytosol_z",
        "description": "Initial value for Cytosol Z. Maps to source symbol `Z`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "micromolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.variable_labels"
      },
      {
        "name": "wstar",
        "label": "Wstar",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.wstar",
        "description": "Wstar. Maps to source symbol `Wstar`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "concentration_v_p",
        "label": "Concentration V P (source vP)",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.concentration_v_p",
        "description": "Concentration V P (source vP). Maps to source symbol `vP`. Units: micromolar_min. Naming evidence: amount concentration units identify a concentration state."
      },
      {
        "name": "phosphorylation_k1",
        "label": "Phosphorylation K1",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.phosphorylation_k1",
        "description": "Phosphorylation K1. Maps to source symbol `K1`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "phosphorylation_k2",
        "label": "Phosphorylation K2",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.phosphorylation_k2",
        "description": "Phosphorylation K2. Maps to source symbol `K2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "phosphorylation_wt",
        "label": "Phosphorylation Wt",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.phosphorylation_wt",
        "description": "Phosphorylation Wt. Maps to source symbol `WT`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cytosol_z",
        "label": "Cytosol Z",
        "maps_to": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.cytosol_z",
        "description": "Cytosol Z. Maps to source symbol `Z`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Dupont1992 - Protein Phosphorylation Driven By Intracellular Calcium Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model",
      "alias": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model",
      "parameters": {
        "model_path": "data/dupont_1992_1.1model.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model_state"
      ],
      "from": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model_summary"
      ],
      "from": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model_trajectory"
      ],
      "from": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model_variable_labels"
      ],
      "from": "physiology_cellml_dupont_goldbeter_1992_dupontgoldbeter1992_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Dupont Goldbeter 1992. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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