BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Noguchi2013 - Insulin dependent glucose metabolism Lab

About lab

Rei Noguchi, Hiroyuki Kubota, Katsuyuki Yugi, Yu Toyoshima, Yasunori Komori, Tomoyoshi Soga & Shinya Kuroda. The selective control of glycolysis, gluconeogenesis and glycogenesis by temporal insulin p.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagenoguchi2013-insulin-dependent-glucose-metabolism-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebifaithfulmetabolismodesbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_glycolysis_state_1",
        "units": "native SBML value",
        "default": 0.4726,
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.initial_glycolysis_state_1",
        "description": "Initial condition for glycolysis state 1. Maps to bundled SBML symbol `GP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_2",
        "units": "native SBML value",
        "default": 0.1723,
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.initial_glycolysis_state_2",
        "description": "Initial condition for glycolysis state 2. Maps to bundled SBML symbol `pGP`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_mitochondrial_rna",
        "units": "native SBML value",
        "default": 2.905,
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.initial_mitochondrial_rna",
        "description": "Initial condition for mitochondrial rna. Maps to bundled SBML symbol `mRNA`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_4",
        "units": "native SBML value",
        "default": 0.7686,
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.initial_glycolysis_state_4",
        "description": "Initial condition for glycolysis state 4. Maps to bundled SBML symbol `PEPCK`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glycolysis_state_5",
        "units": "native SBML value",
        "default": 888.77,
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.initial_glycolysis_state_5",
        "description": "Initial condition for glycolysis state 5. Maps to bundled SBML symbol `IRS`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "glycolysis_state_1",
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.glycolysis_state_1"
      },
      {
        "name": "glycolysis_state_2",
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.glycolysis_state_2"
      },
      {
        "name": "mitochondrial_rna",
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.mitochondrial_rna"
      },
      {
        "name": "glycolysis_state_4",
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.glycolysis_state_4"
      },
      {
        "name": "glycolysis_state_5",
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.glycolysis_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.observable_labels"
      }
    ]
  },
  "title": "Noguchi2013 - Insulin dependent glucose metabolism Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model",
      "alias": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model",
      "parameters": {
        "model_path": "data/BIOMD0000000482.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model_observable_values"
      ],
      "from": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model_run_summary"
      ],
      "from": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model_observable_labels"
      ],
      "from": "metabolism_sbml_noguchi2013_insulin_dependent_glucose_metabolism_biomd0000000482_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Rei Noguchi, Hiroyuki Kubota, Katsuyuki Yugi, Yu Toyoshima, Yasunori Komori, Tomoyoshi Soga & Shinya Kuroda. The selective control of glycolysis, gluconeogenesis and glycogenesis by temporal insulin p.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.