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Physiome 5e2 - Computational Human Ventricular Electrophysiological Lab

About lab

Source-faithful physiology lab for A computational human ventricular electrophysiological model. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-5e2-computational-human-ventricular-electrophysiologica
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `v`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_intracellular_sodium_concentration",
        "label": "Initial Intracellular Sodium Concentration",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.initial_intracellular_sodium_concentration",
        "description": "Initial value for Intracellular Sodium Concentration. Maps to source symbol `nai`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millimolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `v`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_sodium_concentration",
        "label": "Intracellular Sodium Concentration",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.intracellular_sodium_concentration",
        "description": "Intracellular Sodium Concentration. Maps to source symbol `nai`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_potassium_concentration",
        "label": "Intracellular Potassium Concentration",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.intracellular_potassium_concentration",
        "description": "Intracellular Potassium Concentration. Maps to source symbol `ki`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_stim_amplitude",
        "label": "I Stim Amplitude",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.i_stim_amplitude",
        "description": "I Stim Amplitude. Maps to source symbol `i_Stim_Amplitude`. Units: microA_per_microF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_stim_end",
        "label": "I Stim End",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.i_stim_end",
        "description": "I Stim End. Maps to source symbol `i_Stim_End`. Units: millisecond. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "i_stim_period",
        "label": "I Stim Period",
        "maps_to": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.i_stim_period",
        "description": "I Stim Period. Maps to source symbol `i_Stim_Period`. Units: millisecond. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 5e2 - Computational Human Ventricular Electrophysiological Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model",
      "alias": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model",
      "parameters": {
        "model_path": "data/Tomek_model_endo.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model_state"
      ],
      "from": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model_summary"
      ],
      "from": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model_trajectory"
      ],
      "from": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model_variable_labels"
      ],
      "from": "physiology_cellml_a_computational_human_ventricular_electrophysiol_5e2_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for A computational human ventricular electrophysiological model. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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