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Bhalla1999 3d Fold Lab

About lab

This model is based closely on the one from <a href = 'http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9888852&dopt=Abstract'>Bhalla US and Iyengar. It can be used to explore systemsbiology bhalla1999 3d fold model9071122126 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagebhalla1999-3d-fold-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_mapk_slash_mapk",
        "label": "Initial MAPK Slash MAPK",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_mapk_slash_mapk",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_MAPK`."
      },
      {
        "name": "initial_ras_slash_gdp_minus_ras",
        "label": "Initial RAS Slash Gdp Minus RAS",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_ras_slash_gdp_minus_ras",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ras_slash_GDP_minus_Ras`."
      },
      {
        "name": "initial_mapk_slash_craf_minus_1",
        "label": "Initial MAPK Slash Craf Minus 1",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_mapk_slash_craf_minus_1",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_craf_minus_1`."
      },
      {
        "name": "initial_mapk_slash_mapkk",
        "label": "Initial MAPK Slash Mapkk",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_mapk_slash_mapkk",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_MAPKK`."
      },
      {
        "name": "initial_ras_slash_gap",
        "label": "Initial RAS Slash Gap",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_ras_slash_gap",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ras_slash_GAP`."
      },
      {
        "name": "initial_ras_slash_gtp_minus_ras",
        "label": "Initial RAS Slash Gtp Minus RAS",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_ras_slash_gtp_minus_ras",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ras_slash_GTP_minus_Ras`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.species_labels"
      },
      {
        "name": "mapk_slash_mapk",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.mapk_slash_mapk"
      },
      {
        "name": "ras_slash_gdp_minus_ras",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.ras_slash_gdp_minus_ras"
      },
      {
        "name": "mapk_slash_craf_minus_1",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.mapk_slash_craf_minus_1"
      },
      {
        "name": "mapk_slash_mapkk",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.mapk_slash_mapkk"
      },
      {
        "name": "ras_slash_gap",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.ras_slash_gap"
      },
      {
        "name": "ras_slash_gtp_minus_ras",
        "maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.ras_slash_gtp_minus_ras"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Bhalla1999 3d Fold Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model",
      "alias": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model_state"
      ],
      "from": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model_summary"
      ],
      "from": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model_species_labels"
      ],
      "from": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model is based closely on the one from <a href = 'http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9888852&dopt=Abstract'>Bhalla US and Iyengar. It can be used to explore systemsbiology bhalla1999 3d fold model9071122126 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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