About lab
This model is based closely on the one from <a href = 'http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9888852&dopt=Abstract'>Bhalla US and Iyengar. It can be used to explore systemsbiology bhalla1999 3d fold model9071122126 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagebhalla1999-3d-fold-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_mapk_slash_mapk",
"label": "Initial MAPK Slash MAPK",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_mapk_slash_mapk",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_MAPK`."
},
{
"name": "initial_ras_slash_gdp_minus_ras",
"label": "Initial RAS Slash Gdp Minus RAS",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_ras_slash_gdp_minus_ras",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ras_slash_GDP_minus_Ras`."
},
{
"name": "initial_mapk_slash_craf_minus_1",
"label": "Initial MAPK Slash Craf Minus 1",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_mapk_slash_craf_minus_1",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_craf_minus_1`."
},
{
"name": "initial_mapk_slash_mapkk",
"label": "Initial MAPK Slash Mapkk",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_mapk_slash_mapkk",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `MAPK_slash_MAPKK`."
},
{
"name": "initial_ras_slash_gap",
"label": "Initial RAS Slash Gap",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_ras_slash_gap",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ras_slash_GAP`."
},
{
"name": "initial_ras_slash_gtp_minus_ras",
"label": "Initial RAS Slash Gtp Minus RAS",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.initial_ras_slash_gtp_minus_ras",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Ras_slash_GTP_minus_Ras`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.species_labels"
},
{
"name": "mapk_slash_mapk",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.mapk_slash_mapk"
},
{
"name": "ras_slash_gdp_minus_ras",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.ras_slash_gdp_minus_ras"
},
{
"name": "mapk_slash_craf_minus_1",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.mapk_slash_craf_minus_1"
},
{
"name": "mapk_slash_mapkk",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.mapk_slash_mapkk"
},
{
"name": "ras_slash_gap",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.ras_slash_gap"
},
{
"name": "ras_slash_gtp_minus_ras",
"maps_to": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.ras_slash_gtp_minus_ras"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Bhalla1999 3d Fold Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model",
"alias": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model_state"
],
"from": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model_summary"
],
"from": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model_species_labels"
],
"from": "systemsbiology_sbml_bhalla1999_3d_fold_model_model9071122126_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This model is based closely on the one from <a href = 'http://www.ncbi.nlm.nih.gov:80/entrez/query.fcgi?cmd=Retrieve&db=PubMed&list_uids=9888852&dopt=Abstract'>Bhalla US and Iyengar. It can be used to explore systemsbiology bhalla1999 3d fold model9071122126 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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