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Goldbeter1990 - Dupont Berridge Lab

About lab

Source-faithful physiology lab for Goldbeter Dupont Berridge 1990. Public controls and outputs are mapped to real source symbols for calcium handling.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagegoldbeter1990-dupont-berridge-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_ca_y",
        "label": "Initial Ca Y",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.initial_ca_y",
        "description": "Initial value for Ca Y. Maps to source symbol `Y`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "uM"
        ]
      },
      {
        "name": "initial_ca_z",
        "label": "Initial Ca Z",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.initial_ca_z",
        "description": "Initial value for Ca Z. Maps to source symbol `Z`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "uM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.variable_labels"
      },
      {
        "name": "ca_y",
        "label": "Ca Y",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.ca_y",
        "description": "Ca Y. Maps to source symbol `Y`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_z",
        "label": "Ca Z",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.ca_z",
        "description": "Ca Z. Maps to source symbol `Z`. Units: uM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "w_star",
        "label": "W Star",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.w_star",
        "description": "W Star. Maps to source symbol `W_star`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "beta",
        "label": "Beta",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.beta",
        "description": "Beta. Maps to source symbol `beta`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_k",
        "label": "Ca K",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.ca_k",
        "description": "Ca K. Maps to source symbol `k`. Units: per_s. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameter_k_1",
        "label": "Model Parameter K 1 (source K_1)",
        "maps_to": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.model_parameter_k_1",
        "description": "Model Parameter K 1 (source K_1). Maps to source symbol `K_1`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Goldbeter1990 - Dupont Berridge Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_goldbeter_dupont_berridge_1990_35a_model",
      "alias": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model",
      "parameters": {
        "model_path": "data/goldbeter_1990_1.1.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_goldbeter_dupont_berridge_1990_35a_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_goldbeter_dupont_berridge_1990_35a_model_state"
      ],
      "from": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goldbeter_dupont_berridge_1990_35a_model_summary"
      ],
      "from": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goldbeter_dupont_berridge_1990_35a_model_trajectory"
      ],
      "from": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_goldbeter_dupont_berridge_1990_35a_model_variable_labels"
      ],
      "from": "physiology_cellml_goldbeter_dupont_berridge_1990_35a_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Goldbeter Dupont Berridge 1990. Public controls and outputs are mapped to real source symbols for calcium handling.",
  "schema_version": "2.0"
}

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