About lab
Single-model lab wrapper for Paiva2020 - SEIAHRD model of transmission dynamics of COVID-19. This paper proposes a dynamic model to describe and forecast the dynamics of the coronavirus disease COVID-19 transmission. The model is based on an approach previously used to describe the Middle Eas.
Runtime
Duration10
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepaiva2020-seiahrd-model-of-transmission-dynamics-of-covid-19-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "transmission_rate",
"label": "Transmission Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.transmission_rate"
},
{
"name": "incubation_rate",
"label": "Incubation Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.incubation_rate"
},
{
"name": "asymptomatic_fraction",
"label": "Asymptomatic Fraction",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.asymptomatic_fraction"
},
{
"name": "hospitalization_rate",
"label": "Hospitalization Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.hospitalization_rate"
},
{
"name": "hospital_mortality_rate",
"label": "Hospital Mortality Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.hospital_mortality_rate"
},
{
"name": "infectious_mortality_rate",
"label": "Infectious Mortality Rate",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.infectious_mortality_rate"
}
],
"outputs": [
{
"name": "state",
"label": "Model state",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.summary"
},
{
"name": "species_labels",
"label": "Species labels",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.species_labels"
},
{
"name": "exposed",
"label": "Exposed",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.exposed"
},
{
"name": "infectious",
"label": "Infectious",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.infectious"
},
{
"name": "hospitalized",
"label": "Hospitalized",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.hospitalized"
},
{
"name": "deceased",
"label": "Deceased",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.deceased"
},
{
"name": "susceptible",
"label": "Susceptible",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.susceptible"
},
{
"name": "recovered",
"label": "Recovered",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.recovered"
},
{
"name": "asymptomatic",
"label": "Asymptomatic",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.asymptomatic"
},
{
"name": "cumulative_cases",
"label": "Cumulative Cases",
"maps_to": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.cumulative_cases"
}
]
},
"title": "Paiva2020 - SEIAHRD model of transmission dynamics of COVID-19 Lab",
"models": [
{
"path": "owned/models/epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model",
"alias": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model",
"parameters": {
"model_path": "data/BIOMD0000000960.xml",
"integration_step": 0.1
},
"provenance": {
"owned_path": "owned/models/epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model_state"
],
"from": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.state"
},
{
"to": [
"visualisation.epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model_summary"
],
"from": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.summary"
},
{
"to": [
"visualisation.epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model_species_labels"
],
"from": "epidemiology_sbml_paiva2020_seiahrd_model_of_transmission_dynamics_biomd0000000960_model.species_labels"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Single-model lab wrapper for Paiva2020 - SEIAHRD model of transmission dynamics of COVID-19. This paper proposes a dynamic model to describe and forecast the dynamics of the coronavirus disease COVID-19 transmission. The model is based on an approach previously used to describe the Middle Eas.",
"schema_version": "2.0"
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