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Physiome b17 - Pharmacokinetic PK Acetaminophen Neonates Lab

About lab

Source-faithful physiology lab for A pharmacokinetic (PK) model of acetaminophen for neonates. Public controls and outputs are mapped to real source symbols for pharmacokinetics.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-b17-pharmacokinetic-pk-acetaminophen-neonates-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cp_concentration",
        "label": "Initial Cp Concentration",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.initial_cp_concentration",
        "description": "Initial value for Cp Concentration. Maps to source symbol `Cp`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mg_per_litre"
        ]
      },
      {
        "name": "initial_cp_g",
        "label": "Initial Cp G",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.initial_cp_g",
        "description": "Initial value for Cp G. Maps to source symbol `Cp_G`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mg_per_litre"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.variable_labels"
      },
      {
        "name": "volume",
        "label": "Volume",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.volume",
        "description": "Volume. Maps to source symbol `V`. Units: litre. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cp_concentration",
        "label": "Cp Concentration",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.cp_concentration",
        "description": "Cp Concentration. Maps to source symbol `Cp`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cp_g",
        "label": "Cp G",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.cp_g",
        "description": "Cp G. Maps to source symbol `Cp_G`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cp_s",
        "label": "Cp S",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.cp_s",
        "description": "Cp S. Maps to source symbol `Cp_S`. Units: mg_per_litre. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_state_u_cm",
        "label": "Model State U Cm (source U_CM)",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.model_state_u_cm",
        "description": "Model State U Cm (source U_CM). Maps to source symbol `U_CM`. Units: mg. Naming evidence: source symbol is too ambiguous for a stronger public label."
      },
      {
        "name": "model_state_u_g",
        "label": "Model State U G (source U_G)",
        "maps_to": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.model_state_u_g",
        "description": "Model State U G (source U_G). Maps to source symbol `U_G`. Units: mg. Naming evidence: source symbol is too ambiguous for a stronger public label."
      }
    ]
  },
  "title": "Physiome b17 - Pharmacokinetic PK Acetaminophen Neonates Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model",
      "alias": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model",
      "parameters": {
        "model_path": "data/APAP_Pediatric.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model_state"
      ],
      "from": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model_summary"
      ],
      "from": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model_trajectory"
      ],
      "from": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model_variable_labels"
      ],
      "from": "physiology_cellml_a_pharmacokinetic_pk_model_of_acetaminophen_for_b17_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for A pharmacokinetic (PK) model of acetaminophen for neonates. Public controls and outputs are mapped to real source symbols for pharmacokinetics.",
  "schema_version": "2.0"
}

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