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Hutchinson2016 - Vascular phenotype identification and anti-angiogenic treatment recommendation Lab

About lab

This is a spatially averaged multiscale mathematical model of tumor angiogenesis. The model describes the dynamics of VEGF, Ang1, Ang2, and PDGF, coupled with those of mature and immature endothelial.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagehutchinson2016-vascular-phenotype-identification-and-anti-angiog
Created2026-05-16
Updated2026-05-16
angiogenesisbiomodels_ebicurateddrug-responsefaithfulmicroenvironmentoncologypharmacologyphysiologysbmlsystemsbiologytumor-growthvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "epsilon_source_parameter",
        "label": "Epsilon source parameter",
        "units": "native SBML value",
        "default": 0.04,
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.epsilon_source_parameter",
        "description": "Epsilon source parameter. Maps to bundled SBML parameter `epsilon`."
      }
    ],
    "outputs": [
      {
        "name": "v",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.v",
        "description": "V observable. Maps to SBML symbol `v`."
      },
      {
        "name": "rv",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.rv",
        "description": "Rv observable. Maps to SBML symbol `rv`."
      },
      {
        "name": "bv",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.bv",
        "description": "Bv observable. Maps to SBML symbol `bv`."
      },
      {
        "name": "a1",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.a1",
        "description": "A1 observable. Maps to SBML symbol `a1`."
      },
      {
        "name": "aw",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.aw",
        "description": "Aw observable. Maps to SBML symbol `aw`."
      },
      {
        "name": "a2",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.a2",
        "description": "A2 observable. Maps to SBML symbol `a2`."
      },
      {
        "name": "state",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.state",
        "description": "Full raw SBML observable record for reproducibility and downstream visualisation."
      },
      {
        "name": "summary",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.summary",
        "description": "Change and peak summary across the simulated SBML observables."
      },
      {
        "name": "species_labels",
        "maps_to": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.species_labels",
        "description": "Mapping from selected raw SBML observable symbols to display labels."
      }
    ]
  },
  "tags": [
    "angiogenesis",
    "biomodels_ebi",
    "curated",
    "drug-response",
    "faithful",
    "microenvironment",
    "oncology",
    "pharmacology",
    "physiology",
    "sbml",
    "systemsbiology",
    "tumor-growth"
  ],
  "title": "Hutchinson2016 - Vascular phenotype identification and anti-angiogenic treatment recommendation Lab",
  "models": [
    {
      "path": "owned/models/oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model",
      "alias": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model",
      "provenance": {
        "owned_path": "owned/models/oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model_state"
      ],
      "from": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.state"
    },
    {
      "to": [
        "visualisation.oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model_summary"
      ],
      "from": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.summary"
    },
    {
      "to": [
        "visualisation.oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model_species_labels"
      ],
      "from": "oncology_sbml_hutchinson2016_vascular_phenotype_identification_model1911130007_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This is a spatially averaged multiscale mathematical model of tumor angiogenesis. The model describes the dynamics of VEGF, Ang1, Ang2, and PDGF, coupled with those of mature and immature endothelial.",
  "schema_version": "2.0"
}

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