About lab
Clean Biosimulant lab for systems signaling model: Ouyang2014 - photomorphogenic UV-B signalling network. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageouyang2014-photomorphogenic-uv-b-signalling-network-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebiplant-signalingvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_source_defined_uv_state_level",
"label": "source-defined UV state",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.initial_source_defined_uv_state_level",
"description": "source-defined UV state source parameter. Maps to SBML symbol `UV` and preserves the bundled default."
},
{
"name": "initial_uvr8_m",
"label": "Initial UVR8 M",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.initial_uvr8_m",
"description": "Initial level of UVR8 M. Maps to SBML symbol `UVR8_M`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_uvr8d",
"label": "Initial UVR8D",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.initial_uvr8d",
"description": "Initial level of UVR8D. Maps to SBML symbol `UVR8D`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "source_defined_cdcs_state",
"label": "source-defined CDCS state",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.source_defined_cdcs_state",
"description": "source-defined CDCS state. Maps to SBML symbol `CDCS` and is emitted in native SBML units."
},
{
"name": "uvr8m",
"label": "UVR8M",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.uvr8m",
"description": "UVR8M. Maps to SBML symbol `UVR8M` and is emitted in native SBML units."
},
{
"name": "source_defined_ucs_state",
"label": "source-defined UCS state",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.source_defined_ucs_state",
"description": "source-defined UCS state. Maps to SBML symbol `UCS` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"plant-signaling"
],
"title": "Ouyang2014 - photomorphogenic UV-B signalling network Lab",
"models": [
{
"path": "owned/models/signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model",
"alias": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model_state"
],
"from": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.state"
},
{
"to": [
"visualisation.signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model_summary"
],
"from": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model_species_labels"
],
"from": "signaling_sbml_ouyang2014_photomorphogenic_uv_b_signalling_netw_biomd0000000545_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for systems signaling model: Ouyang2014 - photomorphogenic UV-B signalling network. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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