About lab
Source-faithful physiology lab for Bueno, 2007. Public controls and outputs are mapped to real source symbols for electrophysiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagebueno2007-mathematical-modeling-spectral-simulation-genetic-dise
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_membrane_u",
"label": "Initial Membrane U",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.initial_membrane_u",
"description": "Initial value for Membrane U. Maps to source symbol `u`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `v`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "membrane_voltage_vm",
"label": "Membrane Voltage Vm",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.membrane_voltage_vm",
"description": "Membrane Voltage Vm. Maps to source symbol `Vm`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "membrane_u",
"label": "Membrane U",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.membrane_u",
"description": "Membrane U. Maps to source symbol `u`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "slow_inward_current_s_gate_s",
"label": "Slow Inward Current S Gate S",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.slow_inward_current_s_gate_s",
"description": "Slow Inward Current S Gate S. Maps to source symbol `s`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "slow_inward_current_w_gate_w",
"label": "Slow Inward Current W Gate W",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.slow_inward_current_w_gate_w",
"description": "Slow Inward Current W Gate W. Maps to source symbol `w`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "model_variable_v_0",
"label": "Model Variable V 0 (source V_0)",
"maps_to": "physiology_cellml_bueno_2007_bueno2007_model.model_variable_v_0",
"description": "Model Variable V 0 (source V_0). Maps to source symbol `V_0`. Units: mV. Naming evidence: source symbol is too ambiguous for a stronger public label."
}
]
},
"title": "Bueno2007 - Mathematical Modeling Spectral Simulation Genetic Diseases Lab",
"models": [
{
"path": "owned/models/physiology_cellml_bueno_2007_bueno2007_model",
"alias": "physiology_cellml_bueno_2007_bueno2007_model",
"parameters": {
"model_path": "data/bueno_2007.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_bueno_2007_bueno2007_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_bueno_2007_bueno2007_model_state"
],
"from": "physiology_cellml_bueno_2007_bueno2007_model.state"
},
{
"to": [
"visualisation.physiology_cellml_bueno_2007_bueno2007_model_summary"
],
"from": "physiology_cellml_bueno_2007_bueno2007_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_bueno_2007_bueno2007_model_trajectory"
],
"from": "physiology_cellml_bueno_2007_bueno2007_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_bueno_2007_bueno2007_model_variable_labels"
],
"from": "physiology_cellml_bueno_2007_bueno2007_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Bueno, 2007. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
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