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Model of budding yeast critical cell size dependence on growth rate with parameter set 3114 Lab

About lab

Single-model lab wrapper for Model of budding yeast critical cell size dependence on growth rate with parameter set 3114. Model published in the paperChaperone availability subordinates cell cycle entry to growth and stressbyDavid F. Moreno1, Eva Parisi1, Galal Yahya, Federico Vaggi, Attila Csik\u00e1sz-Nagy, Mart\u00ed Aldea.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagemodel-of-budding-yeast-critical-cell-size-dependence-on-growth-r
Created2026-05-15
Updated2026-05-15
cellcyclesbmlbiomodels_ebifaithfulvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "folded_cln3_start_cyclin",
        "label": "Folded Cln3 Start cyclin",
        "maps_to": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.folded_cln3_start_cyclin",
        "description": "Tracks Folded Cln3 Start cyclin in the lab model via `cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.folded_cln3_start_cyclin`."
      },
      {
        "name": "unfolded_cln3_start_cyclin",
        "label": "Unfolded Cln3 Start cyclin",
        "maps_to": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.unfolded_cln3_start_cyclin",
        "description": "Tracks Unfolded Cln3 Start cyclin in the lab model via `cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.unfolded_cln3_start_cyclin`."
      },
      {
        "name": "ydj1_chaperone",
        "label": "Ydj1 chaperone",
        "maps_to": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.ydj1_chaperone",
        "description": "Tracks Ydj1 chaperone in the lab model via `cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.ydj1_chaperone`."
      },
      {
        "name": "model_state_yp",
        "label": "Model state YP",
        "maps_to": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.model_state_yp",
        "description": "Tracks Model state YP in the lab model via `cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.model_state_yp`."
      },
      {
        "name": "model_state_yc",
        "label": "Model state YC",
        "maps_to": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.model_state_yc",
        "description": "Tracks Model state YC in the lab model via `cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.model_state_yc`."
      },
      {
        "name": "prot_model_state_u",
        "label": "Prot Model state U",
        "maps_to": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.prot_model_state_u",
        "description": "Tracks Prot Model state U in the lab model via `cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.prot_model_state_u`."
      },
      {
        "name": "prot_f",
        "label": "Prot F",
        "maps_to": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.prot_f",
        "description": "Tracks Prot F in the lab model via `cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.prot_f`."
      }
    ]
  },
  "title": "Model of budding yeast critical cell size dependence on growth rate with parameter set 3114 Lab",
  "models": [
    {
      "path": "owned/models/cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model",
      "alias": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model",
      "provenance": {
        "owned_path": "owned/models/cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model_state"
      ],
      "from": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.state"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model_summary"
      ],
      "from": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.summary"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model_species_labels"
      ],
      "from": "cellcycle_sbml_model_of_budding_yeast_critical_cell_size_depend_model1808310001_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Single-model lab wrapper for Model of budding yeast critical cell size dependence on growth rate with parameter set 3114. Model published in the paperChaperone availability subordinates cell cycle entry to growth and stressbyDavid F. Moreno1, Eva Parisi1, Galal Yahya, Federico Vaggi, Attila Csik\\u00e1sz-Nagy, Mart\\u00ed Aldea.",
  "schema_version": "2.0"
}

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