BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Kim2011 Oscillator Simplei Lab

About lab

This a model from the article: Synthetic in vitro transcriptional oscillators. It can be used to explore systemsbiology kim2011 oscillator simplei BioModels0000000322 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagekim2011-oscillator-simplei-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_model_state_y",
        "label": "Initial Model State Y",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.initial_model_state_y",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_2`."
      },
      {
        "name": "initial_model_state_x",
        "label": "Initial Model State X",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.initial_model_state_x",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
      },
      {
        "name": "initial_model_state_v",
        "label": "Initial Model State V",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.initial_model_state_v",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_4`."
      },
      {
        "name": "initial_model_state_u",
        "label": "Initial Model State U",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.initial_model_state_u",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_3`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.species_labels"
      },
      {
        "name": "model_state_y",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.model_state_y"
      },
      {
        "name": "model_state_x",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.model_state_x"
      },
      {
        "name": "model_state_v",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.model_state_v"
      },
      {
        "name": "model_state_u",
        "maps_to": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.model_state_u"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Kim2011 Oscillator Simplei Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model",
      "alias": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model_state"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model_summary"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model_species_labels"
      ],
      "from": "systemsbiology_sbml_kim2011_oscillator_simplei_biomd0000000322_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This a model from the article: Synthetic in vitro transcriptional oscillators. It can be used to explore systemsbiology kim2011 oscillator simplei BioModels0000000322 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.