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Lavrentovich2008 Ca Oscillations Lab

About lab

The model reproduces the time profile of cytoplasmic Calcium as depicted in Fig 3 of the paper. It can be used to explore systemsbiology lavrentovich2008 ca oscillations BioModels0000000184 dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagelavrentovich2008-ca-oscillations-lab
Created2026-05-17
Updated2026-05-17
physiologysystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_calcium_in_er",
        "label": "Initial Calcium In Er",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.initial_calcium_in_er",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Y`."
      },
      {
        "name": "initial_model_state_ip3",
        "label": "Initial Model State IP3",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.initial_model_state_ip3",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Z`."
      },
      {
        "name": "initial_cytoplasmic_calcium",
        "label": "Initial Cytoplasmic Calcium",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.initial_cytoplasmic_calcium",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `X`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.species_labels"
      },
      {
        "name": "calcium_in_er",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.calcium_in_er"
      },
      {
        "name": "ip3",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.ip3"
      },
      {
        "name": "cytoplasmic_calcium",
        "maps_to": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.cytoplasmic_calcium"
      }
    ]
  },
  "tags": [
    "physiology",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Lavrentovich2008 Ca Oscillations Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model",
      "alias": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model_state"
      ],
      "from": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model_summary"
      ],
      "from": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model_species_labels"
      ],
      "from": "systemsbiology_sbml_lavrentovich2008_ca_oscillations_biomd0000000184_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "The model reproduces the time profile of cytoplasmic Calcium as depicted in Fig 3 of the paper. It can be used to explore systemsbiology lavrentovich2008 ca oscillations BioModels0000000184 dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

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