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Roda2020 - SIR model of COVID-19 spread in Wuhan Lab

About lab

Single-model lab wrapper for Roda2020 - SIR model of COVID-19 spread in Wuhan. =Since the COVID-19 outbreak in Wuhan City in December of 2019, numerous model predictions on the COVID-19 epidemics in Wuhan and other parts of China have been reported. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.

Runtime

Duration10
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageroda2020-sir-model-of-covid-19-spread-in-wuhan-lab
Created2026-05-15
Updated2026-05-15
biomodels_ebicuratedepidemiologyfaithfulsbmltelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "transmission_rate",
        "label": "Transmission Rate",
        "maps_to": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.transmission_rate"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Model state",
        "maps_to": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation summary",
        "maps_to": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.summary"
      },
      {
        "name": "species_labels",
        "label": "Species labels",
        "maps_to": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.species_labels"
      },
      {
        "name": "infected",
        "label": "Infected",
        "maps_to": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.infected"
      },
      {
        "name": "susceptible",
        "label": "Susceptible",
        "maps_to": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.susceptible"
      },
      {
        "name": "recovered",
        "label": "Recovered",
        "maps_to": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.recovered"
      },
      {
        "name": "confirmed",
        "label": "Confirmed",
        "maps_to": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.confirmed"
      }
    ]
  },
  "title": "Roda2020 - SIR model of COVID-19 spread in Wuhan Lab",
  "models": [
    {
      "path": "owned/models/epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model",
      "alias": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model",
      "parameters": {
        "model_path": "data/BIOMD0000000957.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model_state"
      ],
      "from": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.state"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model_summary"
      ],
      "from": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.summary"
    },
    {
      "to": [
        "visualisation.epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model_species_labels"
      ],
      "from": "epidemiology_sbml_roda2020_sir_model_of_covid_19_spread_in_wuhan_biomd0000000957_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Single-model lab wrapper for Roda2020 - SIR model of COVID-19 spread in Wuhan. =Since the COVID-19 outbreak in Wuhan City in December of 2019, numerous model predictions on the COVID-19 epidemics in Wuhan and other parts of China have been reported. It can be used to explore transmission dynamics and compare scenario outcomes across conditions.",
  "schema_version": "2.0"
}

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