PetelenzKuehn_osmoadaptation_gpd1D Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_metabolic_pathway_state_1",
        "units": "native SBML value",
        "default": 0.112096,
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.initial_metabolic_pathway_state_1",
        "description": "Initial condition for metabolic pathway state 1. Maps to bundled SBML symbol `glycerol_i`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_2",
        "units": "native SBML value",
        "default": 0.651922,
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.initial_metabolic_pathway_state_2",
        "description": "Initial condition for metabolic pathway state 2. Maps to bundled SBML symbol `cin`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_3",
        "units": "native SBML value",
        "default": 2.77983,
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.initial_metabolic_pathway_state_3",
        "description": "Initial condition for metabolic pathway state 3. Maps to bundled SBML symbol `glucose_i`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 1.37587,
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `G6P`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_metabolic_pathway_state_5",
        "units": "native SBML value",
        "default": 0.00309562,
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.initial_metabolic_pathway_state_5",
        "description": "Initial condition for metabolic pathway state 5. Maps to bundled SBML symbol `trehalose`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "metabolic_pathway_state_1",
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.metabolic_pathway_state_1"
      },
      {
        "name": "metabolic_pathway_state_2",
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.metabolic_pathway_state_2"
      },
      {
        "name": "metabolic_pathway_state_3",
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.metabolic_pathway_state_3"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.glucose_6_phosphate"
      },
      {
        "name": "metabolic_pathway_state_5",
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.metabolic_pathway_state_5"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.observable_labels"
      }
    ]
  },
  "title": "PetelenzKuehn_osmoadaptation_gpd1D Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model",
      "alias": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model",
      "parameters": {
        "model_path": "data/BIOMD0000000610.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model_observable_values"
      ],
      "from": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model_run_summary"
      ],
      "from": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model_observable_labels"
      ],
      "from": "metabolism_sbml_petelenzkuehn_osmoadaptation_gpd1d_biomd0000000610_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Petelenz-kurdzeil2013 - Osmo adaptationgpd1D This model is described in the article: Quantitative analysis of glycerol accumulation, glycolysis and growth under hyper osmotic stress. It can be used to explore metabolic flux dynamics and compare pathway behavior across conditions.",
  "schema_version": "2.0"
}