About lab
Martins2013 True And Apparent Inhibition Of Amyloid Fribril Formation
This Biosimulant lab wraps Martins2013 True And Apparent Inhibition Of Amyloid Fribril Formation as a runnable systems biology model with a companion visualization module.
Martins2013 - True and apparent inhibition ofamyloid fribril formation This model is described in the article: True and apparent inhibition of amyloid fibril formation. It can be used to explore the configured dynamics and compare scenario outcomes across configurations.
What You'll See
The lab asks: Which source-defined system states dominate this SBML model trajectory? Source model: Martins2013 - True and apparent inhibition of amyloid fribril formation. It runs for 1.0 time units with a communication step of 0.1. The run uses the model defaults declared by the curated SBML wrapper. The generated visualizations focus on Amyloid, combining trajectory, endpoint-comparison, and summary-table views from one completed dark-mode run.
In this captured run, Amyloid moved from 0 to 0.000568 across 1.0 simulation windows.
Output Visualizations
Summary table for Martins2013 True And Apparent Inhibition Of Amyloid Fribril Formation, reporting the scientific question, observed answer, dominant module, and caveat.
Trajectories of Amyloid across the 1.0 simulation. In this run Amyloid climbed from 0 to 0.000568 — the largest movements among the focused observables.
Largest-excursion ranking of the focused observables — the absolute movement magnitude during the run. Top 1: Amyloid = 0.000568.
Endpoint snapshot of the focused observables — final values from the captured run. Top 1 by value: Amyloid = 0.000568.
Model Context
- Core model:
models/core - Visualization model:
models/visualisation - Standard:
other - Upstream source:
biomodels_ebi:BIOMD0000000561 - License:
CC0
Inputs
| Input | Maps To | Default | Notes |
|---|---|---|---|
| Initial Amyloid | systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.initial_amyloid | Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol Amyloid. |
Outputs
| Output | Maps To | Role |
|---|---|---|
state | systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.state | Available to the visualization model and downstream workflows. |
summary | systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.summary | Available to the visualization model and downstream workflows. |
species_labels | systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.species_labels | Available to the visualization model and downstream workflows. |
amyloid | systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.amyloid | Available to the visualization model and downstream workflows. |
Runtime
- Duration:
1.0 - Communication step:
0.1
Running Locally
biosimulant labs serve
Martins2013 - True and apparent inhibition ofamyloid fribril formation This model is described in the article: True and apparent inhibition of amyloid fibril formation. It can be used to explore systemsbiology martins2013 true and apparent inhibition dynamics and compare simulation behavior across conditions.
Runtime
Runs
Metadata
Manifest
{
"io": {
"inputs": [
{
"name": "initial_amyloid",
"label": "Initial Amyloid",
"maps_to": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.initial_amyloid",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Amyloid`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.species_labels"
},
{
"name": "amyloid",
"maps_to": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.amyloid"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Martins2013 True And Apparent Inhibition Of Amyloid Fribril Formation Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model",
"alias": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model_state"
],
"from": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model_summary"
],
"from": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model_species_labels"
],
"from": "systemsbiology_sbml_martins2013_true_and_apparent_inhibition_of_amyl_biomd0000000561_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Martins2013 - True and apparent inhibition ofamyloid fribril formation This model is described in the article: True and apparent inhibition of amyloid fibril formation. It can be used to explore systemsbiology martins2013 true and apparent inhibition dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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