Costa2015 - Central metabolism of E. coli, extended regulated linlog model ( with additional allosteric regulations than the Model1) Lab

{
  "io": {
    "inputs": [
      {
        "name": "initial_phosphoenol_pyruvate",
        "units": "native SBML value",
        "default": 2.67,
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.initial_phosphoenol_pyruvate",
        "description": "Initial condition for phosphoenol pyruvate. Maps to bundled SBML symbol `cpep`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_extracellular_glucose",
        "units": "native SBML value",
        "default": 0.0556,
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.initial_extracellular_glucose",
        "description": "Initial condition for extracellular glucose. Maps to bundled SBML symbol `cglcex`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_glucose_6_phosphate",
        "units": "native SBML value",
        "default": 3.48,
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.initial_glucose_6_phosphate",
        "description": "Initial condition for glucose 6 phosphate. Maps to bundled SBML symbol `cg6p`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_microbial_metabolism_state_4",
        "units": "native SBML value",
        "default": 2.67,
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.initial_microbial_metabolism_state_4",
        "description": "Initial condition for microbial metabolism state 4. Maps to bundled SBML symbol `cpyr`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      },
      {
        "name": "initial_fructose_6_phosphate",
        "units": "native SBML value",
        "default": 0.6,
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.initial_fructose_6_phosphate",
        "description": "Initial condition for fructose 6 phosphate. Maps to bundled SBML symbol `cf6p`. Applied before the Tellurium simulation starts; this does not change kinetic parameters or equations. Default from bundled SBML initial value."
      }
    ],
    "outputs": [
      {
        "name": "phosphoenol_pyruvate",
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.phosphoenol_pyruvate"
      },
      {
        "name": "extracellular_glucose",
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.extracellular_glucose"
      },
      {
        "name": "glucose_6_phosphate",
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.glucose_6_phosphate"
      },
      {
        "name": "microbial_metabolism_state_4",
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.microbial_metabolism_state_4"
      },
      {
        "name": "fructose_6_phosphate",
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.fructose_6_phosphate"
      },
      {
        "name": "observable_values",
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.observable_values"
      },
      {
        "name": "run_summary",
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.run_summary"
      },
      {
        "name": "observable_labels",
        "maps_to": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.observable_labels"
      }
    ]
  },
  "title": "Costa2015 - Central metabolism of E. coli, extended regulated linlog model ( with additional allosteric regulations than the Model1) Lab",
  "models": [
    {
      "path": "owned/models/metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model",
      "alias": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model",
      "parameters": {
        "model_path": "data/MODEL1504080006.xml",
        "integration_step": 0.1
      },
      "provenance": {
        "owned_path": "owned/models/metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model_observable_values"
      ],
      "from": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.observable_values"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model_run_summary"
      ],
      "from": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.run_summary"
    },
    {
      "to": [
        "visualisation.metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model_observable_labels"
      ],
      "from": "metabolism_sbml_costa2015_central_metabolism_of_e_coli_extended_model1504080006_model.observable_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Metabolism Costa2015Central Metabolism Of EColi Extended Model1504080006Model models core biological dynamics as a OTHER simulation curated from biomodels_ebi (biomodels_ebi:MODEL1504080006), focused on metabol. When you run it, you can track state over time and compare response patterns across parameter settings.",
  "schema_version": "2.0"
}