About lab
Source-faithful physiology lab for Bertram, Arnot, Zamponi, 2002. Public controls and outputs are mapped to real source symbols for electrophysiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagebertram2002-role-g-protein-g-beta-gamma-isoform-specificity-syna
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"mV"
]
},
{
"name": "initial_potassium_n_gate",
"label": "Initial Potassium N Gate",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.initial_potassium_n_gate",
"description": "Initial value for Potassium N Gate. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "potassium_n_gate",
"label": "Potassium N Gate",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.potassium_n_gate",
"description": "Potassium N Gate. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_x",
"label": "Alpha X",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.alpha_x",
"description": "Alpha X. Maps to source symbol `alpha_x`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "beta_x",
"label": "Beta X",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.beta_x",
"description": "Beta X. Maps to source symbol `beta_x`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "sodium_current",
"label": "Sodium Current",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.sodium_current",
"description": "Sodium Current. Maps to source symbol `i_Na`. Units: uA_per_cm2. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "alpha_n",
"label": "Alpha N",
"maps_to": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.alpha_n",
"description": "Alpha N. Maps to source symbol `alpha_n`. Units: per_ms. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Bertram2002 - Role G Protein G Beta Gamma Isoform Specificity Synaptic Lab",
"models": [
{
"path": "owned/models/physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model",
"alias": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model",
"parameters": {
"model_path": "data/bertram_arnot_zamponi_2002.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model_state"
],
"from": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.state"
},
{
"to": [
"visualisation.physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model_summary"
],
"from": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model_trajectory"
],
"from": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model_variable_labels"
],
"from": "physiology_cellml_bertram_arnot_zamponi_2002_bertramarnotzamponi2002_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Bertram, Arnot, Zamponi, 2002. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
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