About lab
described in: Pharmacokinetic-pharmacodynamic modeling of caffeine: Tolerance to pressor effects Shi J, Benowitz NL, Denaro CP and Sheiner LB. It can be used to explore dose-response dynamics and compare treatment scenarios across conditions.
Runtime
Duration60
Comms Step2
Runs
Total0
Completed0
Failed0
Metadata
Packageshi1993-caffeine-pressor-tolerance-lab
Created2026-05-16
Updated2026-05-16
pharmacologypharmacodynamicscardiovascularphysiologytolerancesbmltelluriumfaithfulbiomodels_ebivisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_gut_caffeine_amount",
"label": "Initial Gut Caffeine Amount",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.initial_gut_caffeine_amount"
},
{
"name": "initial_plasma_caffeine_concentration",
"label": "Initial Plasma Caffeine Concentration",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.initial_plasma_caffeine_concentration"
},
{
"name": "initial_effect_site_caffeine",
"label": "Initial Effect Site Caffeine",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.initial_effect_site_caffeine"
},
{
"name": "initial_tolerance_state",
"label": "Initial Tolerance State",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.initial_tolerance_state"
}
],
"outputs": [
{
"name": "state",
"label": "Tracked source state",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.species_labels"
},
{
"name": "gut_caffeine_amount",
"label": "Gut Caffeine Amount",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.gut_caffeine_amount"
},
{
"name": "plasma_caffeine_concentration",
"label": "Plasma Caffeine Concentration",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.plasma_caffeine_concentration"
},
{
"name": "peripheral_caffeine_concentration",
"label": "Peripheral Caffeine Concentration",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.peripheral_caffeine_concentration"
},
{
"name": "effect_site_caffeine_concentration",
"label": "Effect Site Caffeine Concentration",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.effect_site_caffeine_concentration"
},
{
"name": "tolerance_state",
"label": "Tolerance State",
"maps_to": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.tolerance_state"
}
]
},
"tags": [
"pharmacology",
"pharmacodynamics",
"cardiovascular",
"physiology",
"tolerance",
"sbml",
"tellurium",
"faithful",
"biomodels_ebi"
],
"title": "Shi1993_Caffeine_pressor_tolerance Lab",
"models": [
{
"path": "owned/models/pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model",
"alias": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model",
"parameters": {
"model_path": "data/BIOMD0000000241.xml",
"integration_step": 0.2
},
"provenance": {
"owned_path": "owned/models/pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model_state"
],
"from": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.state"
},
{
"to": [
"visualisation.pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model_summary"
],
"from": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.summary"
},
{
"to": [
"visualisation.pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model_species_labels"
],
"from": "pharmacology_sbml_shi1993_caffeine_pressor_tolerance_biomd0000000241_model.species_labels"
}
],
"runtime": {
"duration": 60,
"initial_inputs": {},
"communication_step": 2
},
"description": "described in: Pharmacokinetic-pharmacodynamic modeling of caffeine: Tolerance to pressor effects Shi J, Benowitz NL, Denaro CP and Sheiner LB. It can be used to explore dose-response dynamics and compare treatment scenarios across conditions.",
"schema_version": "2.0"
}Sign in to start your own run. Public-lab history stays visible here.
Select a run from History to view its results.