About lab
Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagepadala2017-erk-pi3k-akt-and-wnt-signalling-network-normal-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebimapkras-erkpi3k-aktwntoncologyvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_p_egfr",
"label": "Initial P EGFR",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.initial_p_egfr",
"description": "Initial level of P EGFR. Maps to SBML symbol `pEGFR`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_bound_egfr",
"label": "Initial bound EGFR",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.initial_bound_egfr",
"description": "Initial level of bound EGFR. Maps to SBML symbol `bEGFR`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_egf",
"label": "Initial EGF",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.initial_egf",
"description": "Initial level of EGF. Maps to SBML symbol `EGF`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "apc_axin",
"label": "APC Axin",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.apc_axin",
"description": "APC Axin. Maps to SBML symbol `APCAxin` and is emitted in native SBML units."
},
{
"name": "apc_axin_gsk3b",
"label": "APC Axin Gsk3b",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.apc_axin_gsk3b",
"description": "APC Axin Gsk3b. Maps to SBML symbol `APCAxinGSK3B` and is emitted in native SBML units."
},
{
"name": "apc_b_catenin",
"label": "APC B Catenin",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.apc_b_catenin",
"description": "APC B Catenin. Maps to SBML symbol `APCBCatenin` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"mapk",
"ras-erk",
"pi3k-akt",
"wnt",
"oncology"
],
"title": "Padala2017- ERK, PI3K/Akt and Wnt signalling network (normal) Lab",
"models": [
{
"path": "owned/models/signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model",
"alias": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model_state"
],
"from": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.state"
},
{
"to": [
"visualisation.signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model_summary"
],
"from": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model_species_labels"
],
"from": "signaling_sbml_padala2017_erk_pi3k_akt_and_wnt_signalling_netwo_biomd0000000648_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for MAPK/ERK receptor signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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