About lab
Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetlr4-nfkb-phospho-nf-kb-signaling-in-bmdm-lab
Created2026-05-16
Updated2026-05-16
signalingsystemssystems-biologysbmlfaithfulbiomodels_ebinfkbtlr-signalingimmune-signalingphysiologyvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_sink_species",
"label": "Initial sink species",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.initial_sink_species",
"description": "Initial level of sink species. Maps to SBML symbol `species_23`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_source_dna",
"label": "Initial Source DNA",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.initial_source_dna",
"description": "Initial level of Source DNA. Maps to SBML symbol `species_22`; exposed as a traceable initial-condition perturbation."
},
{
"name": "initial_cd14lps",
"label": "Initial CD14LPS",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.initial_cd14lps",
"description": "Initial level of CD14LPS. Maps to SBML symbol `CD14LPS`; exposed as a traceable initial-condition perturbation."
}
],
"outputs": [
{
"name": "ik_ba_nfk_b",
"label": "Ik Ba Nfk B",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.ik_ba_nfk_b",
"description": "Ik Ba Nfk B. Maps to SBML symbol `species_30` and is emitted in native SBML units."
},
{
"name": "nfkb",
"label": "NF-kB",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.nfkb",
"description": "NF-kB. Maps to SBML symbol `species_31` and is emitted in native SBML units."
},
{
"name": "ikk_p_ik_ba_nfk_b",
"label": "IKK P Ik Ba Nfk B",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.ikk_p_ik_ba_nfk_b",
"description": "IKK P Ik Ba Nfk B. Maps to SBML symbol `species_32` and is emitted in native SBML units."
},
{
"name": "state",
"label": "Observable state",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.state"
},
{
"name": "summary",
"label": "Simulation summary",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.summary"
},
{
"name": "species_labels",
"label": "Observable labels",
"maps_to": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.species_labels"
}
]
},
"tags": [
"signaling",
"systems",
"systems-biology",
"sbml",
"faithful",
"biomodels_ebi",
"nfkb",
"tlr-signaling",
"immune-signaling",
"physiology"
],
"title": "TLR4-NFkB-phospho-NF-kB signaling in BMDM Lab",
"models": [
{
"path": "owned/models/signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model",
"alias": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model",
"provenance": {
"owned_path": "owned/models/signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model_state"
],
"from": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.state"
},
{
"to": [
"visualisation.signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model_summary"
],
"from": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.summary"
},
{
"to": [
"visualisation.signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model_species_labels"
],
"from": "signaling_sbml_tlr4_nfkb_phospho_nf_kb_signaling_in_bmdm_model1809230001_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "Clean Biosimulant lab for NF-kB pathway signaling. Values are native SBML quantities; equations, parameters, and initial values remain in the bundled source file.",
"schema_version": "2.0"
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