About lab
Source-faithful physiology lab for Kurata, Hisatome, Imanishi, Shibamoto, 2002. Public controls and outputs are mapped to real source symbols for electrophysiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagekurata2002-dynamical-description-sinoatrial-node-pacema-bbe83004
Created2026-05-23
Updated2026-06-13
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
},
{
"name": "initial_calcium_d_gate",
"label": "Initial Calcium D Gate",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.initial_calcium_d_gate",
"description": "Initial value for Calcium D Gate. Maps to source symbol `d`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"dimensionless"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.variable_labels"
},
{
"name": "k12",
"label": "K12",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k12",
"description": "K12. Maps to source symbol `k12`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k14",
"label": "K14",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k14",
"description": "K14. Maps to source symbol `k14`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k1ni",
"label": "K1ni",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k1ni",
"description": "K1ni. Maps to source symbol `K1ni`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k1no",
"label": "K1no",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k1no",
"description": "K1no. Maps to source symbol `K1no`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k21",
"label": "K21",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k21",
"description": "K21. Maps to source symbol `k21`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "k23",
"label": "K23",
"maps_to": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.k23",
"description": "K23. Maps to source symbol `k23`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Kurata2002 - Dynamical Description Sinoatrial Node Pacemaking Improved Lab",
"models": [
{
"path": "models/core",
"alias": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model",
"parameters": {
"model_path": "data/kurata_hisatome_imanishi_shibamoto_2002.cellml",
"integration_step": 0.01
}
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model_state"
],
"from": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.state"
},
{
"to": [
"visualisation.physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model_summary"
],
"from": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model_trajectory"
],
"from": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model_variable_labels"
],
"from": "physiology_cellml_kurata_hisatome_imanishi_shibamoto_2002_kuratahisatomeimanishishibamoto2002_model.variable_labels"
}
],
"package": "kurata2002-dynamical-description-sinoatrial-node-pacema-bbe83004",
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"version": "1.0.0",
"description": "Source-faithful physiology lab for Kurata, Hisatome, Imanishi, Shibamoto, 2002. Public controls and outputs are mapped to real source symbols for electrophysiology.",
"schema_version": "2.0"
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