BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Physiome 4be - Atrial Fibroblast Lab

About lab

Source-faithful physiology lab for Atrial fibroblast model. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagephysiome-4be-atrial-fibroblast-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "millivolt"
        ]
      },
      {
        "name": "initial_transient_outward_k_current_oa_gate_oa",
        "label": "Initial Transient Outward K Current Oa Gate Oa",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.initial_transient_outward_k_current_oa_gate_oa",
        "description": "Initial value for Transient Outward K Current Oa Gate Oa. Maps to source symbol `oa`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.variable_labels"
      },
      {
        "name": "sodium_current",
        "label": "Sodium Current",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.sodium_current",
        "description": "Sodium Current. Maps to source symbol `i_NaK`. Units: picoA_per_picoF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_current_i_na_k_max",
        "label": "Sodium Current I Na K Max",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.sodium_current_i_na_k_max",
        "description": "Sodium Current I Na K Max. Maps to source symbol `i_NaK_max`. Units: picoA_per_picoF. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_sodium",
        "label": "Intracellular Sodium",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.intracellular_sodium",
        "description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_potassium",
        "label": "Intracellular Potassium",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.intracellular_potassium",
        "description": "Intracellular Potassium. Maps to source symbol `K_i`. Units: millimolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "sodium_conductance",
        "label": "Sodium Conductance",
        "maps_to": "physiology_cellml_atrial_fibroblast_model_4be_model.sodium_conductance",
        "description": "Sodium Conductance. Maps to source symbol `g_b_Na`. Units: nanoS_per_picoF. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Physiome 4be - Atrial Fibroblast Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_atrial_fibroblast_model_4be_model",
      "alias": "physiology_cellml_atrial_fibroblast_model_4be_model",
      "parameters": {
        "model_path": "data/Morgan_atrial_fibroblast_2016.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_atrial_fibroblast_model_4be_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_atrial_fibroblast_model_4be_model_state"
      ],
      "from": "physiology_cellml_atrial_fibroblast_model_4be_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_atrial_fibroblast_model_4be_model_summary"
      ],
      "from": "physiology_cellml_atrial_fibroblast_model_4be_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_atrial_fibroblast_model_4be_model_trajectory"
      ],
      "from": "physiology_cellml_atrial_fibroblast_model_4be_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_atrial_fibroblast_model_4be_model_variable_labels"
      ],
      "from": "physiology_cellml_atrial_fibroblast_model_4be_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Atrial fibroblast model. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.