About lab
Source-faithful physiology lab for Pedersen, Bertram, Sherman, 2005. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.
Runtime
Duration0.01
Comms Step0.01
Settle Steps1
Runs
Total0
Completed0
Failed0
Metadata
Packagepedersen2005-bertram-sherman-mathematical-metabolically-driven-i
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother
Manifest
{
"io": {
"inputs": [
{
"name": "initial_voltage_dependent_potassium_current_n_gate",
"label": "Initial Voltage Dependent Potassium Current N Gate",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.initial_voltage_dependent_potassium_current_n_gate",
"description": "Initial value for Voltage Dependent Potassium Current N Gate. Maps to source symbol `n`. Units: dimensionless. Naming evidence: source metadata names `n` as `voltage-dependent potassium current n gate`.",
"accepted_units": [
"dimensionless"
]
},
{
"name": "initial_membrane_voltage",
"label": "Initial Membrane Voltage",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.initial_membrane_voltage",
"description": "Initial value for Membrane Voltage. Maps to source symbol `v`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name.",
"accepted_units": [
"millivolt"
]
}
],
"outputs": [
{
"name": "state",
"label": "Selected Source State",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.state"
},
{
"name": "summary",
"label": "Simulation Summary",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.summary"
},
{
"name": "trajectory",
"label": "Source Trajectory",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.trajectory"
},
{
"name": "variable_labels",
"label": "Observable Labels",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.variable_labels"
},
{
"name": "membrane_voltage",
"label": "Membrane Voltage",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.membrane_voltage",
"description": "Membrane Voltage. Maps to source symbol `v`. Units: millivolt. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "adp3",
"label": "Adp3",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.adp3",
"description": "Adp3. Maps to source symbol `ADP3`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "mg_adp",
"label": "Mg ADP",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.mg_adp",
"description": "Mg ADP. Maps to source symbol `MgADP`. Units: micromolar. Naming evidence: source symbol, component, or units provide a direct public name."
},
{
"name": "calcium",
"label": "Calcium",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.calcium",
"description": "Calcium. Maps to source symbol `Ca`. Units: micromolar. Naming evidence: source metadata names `Ca` as `calcium`."
},
{
"name": "adenosine_diphosphate",
"label": "Adenosine Diphosphate",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.adenosine_diphosphate",
"description": "Adenosine Diphosphate. Maps to source symbol `ADP`. Units: micromolar. Naming evidence: source metadata names `ADP` as `adenosine diphosphate`."
},
{
"name": "membrane_cm",
"label": "Membrane Cm",
"maps_to": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.membrane_cm",
"description": "Membrane Cm. Maps to source symbol `cm`. Units: femtofarad. Naming evidence: source symbol, component, or units provide a direct public name."
}
]
},
"title": "Pedersen2005 - Bertram Sherman Mathematical Metabolically Driven Insulin Lab",
"models": [
{
"path": "owned/models/physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model",
"alias": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model",
"parameters": {
"model_path": "data/pedersen_bertram_sherman_2005.cellml",
"integration_step": 0.01
},
"provenance": {
"owned_path": "owned/models/physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model_state"
],
"from": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.state"
},
{
"to": [
"visualisation.physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model_summary"
],
"from": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.summary"
},
{
"to": [
"visualisation.physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model_trajectory"
],
"from": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.trajectory"
},
{
"to": [
"visualisation.physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model_variable_labels"
],
"from": "physiology_cellml_pedersen_bertram_sherman_2005_pedersenbertramsherman2005_model.variable_labels"
}
],
"runtime": {
"duration": 0.01,
"settle_steps": 1,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Source-faithful physiology lab for Pedersen, Bertram, Sherman, 2005. Public controls and outputs are mapped to real source symbols for glucose-insulin physiology.",
"schema_version": "2.0"
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