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Rangamani2007 - Sirovich Cell Survival Apoptotic Pathways Initiated By Tnf Lab

About lab

Source-faithful physiology lab for Rangamani 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagerangamani2007-sirovich-cell-survival-apoptotic-pathways-initiate
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_c10",
        "label": "Initial C10",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.initial_c10",
        "description": "Initial value for C10. Maps to source symbol `c10`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "nanomolar"
        ]
      },
      {
        "name": "initial_c11",
        "label": "Initial C11",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.initial_c11",
        "description": "Initial value for C11. Maps to source symbol `c11`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "nanomolar"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.variable_labels"
      },
      {
        "name": "c10",
        "label": "C10",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.c10",
        "description": "C10. Maps to source symbol `c10`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c11",
        "label": "C11",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.c11",
        "description": "C11. Maps to source symbol `c11`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c12",
        "label": "C12",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.c12",
        "description": "C12. Maps to source symbol `c12`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c13",
        "label": "C13",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.c13",
        "description": "C13. Maps to source symbol `c13`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c14",
        "label": "C14",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.c14",
        "description": "C14. Maps to source symbol `c14`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "c15",
        "label": "C15",
        "maps_to": "physiology_cellml_rangamani_2007_rangamani2007_model.c15",
        "description": "C15. Maps to source symbol `c15`. Units: nanomolar. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Rangamani2007 - Sirovich Cell Survival Apoptotic Pathways Initiated By Tnf Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_rangamani_2007_rangamani2007_model",
      "alias": "physiology_cellml_rangamani_2007_rangamani2007_model",
      "parameters": {
        "model_path": "data/rangamani_2007.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_rangamani_2007_rangamani2007_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_rangamani_2007_rangamani2007_model_state"
      ],
      "from": "physiology_cellml_rangamani_2007_rangamani2007_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rangamani_2007_rangamani2007_model_summary"
      ],
      "from": "physiology_cellml_rangamani_2007_rangamani2007_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rangamani_2007_rangamani2007_model_trajectory"
      ],
      "from": "physiology_cellml_rangamani_2007_rangamani2007_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_rangamani_2007_rangamani2007_model_variable_labels"
      ],
      "from": "physiology_cellml_rangamani_2007_rangamani2007_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Rangamani 2007. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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