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Shen-Orr2002_Single_Input_Module Lab

About lab

Curated microbiology lab for Shen-Orr2002_Single_Input_Module. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration10
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packageshen-orr2002-single-input-module-lab
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "input_regulator_level",
        "maps_to": "shenorr2002_single_input_module.input_regulator_level"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "shenorr2002_single_input_module.state"
      },
      {
        "name": "summary",
        "maps_to": "shenorr2002_single_input_module.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "shenorr2002_single_input_module.species_labels"
      },
      {
        "name": "input_regulator",
        "maps_to": "shenorr2002_single_input_module.input_regulator"
      },
      {
        "name": "target_gene_1",
        "maps_to": "shenorr2002_single_input_module.target_gene_1"
      },
      {
        "name": "target_gene_2",
        "maps_to": "shenorr2002_single_input_module.target_gene_2"
      },
      {
        "name": "target_gene_3",
        "maps_to": "shenorr2002_single_input_module.target_gene_3"
      }
    ]
  },
  "title": "Shen-Orr2002_Single_Input_Module Lab",
  "models": [
    {
      "path": "owned/models/shenorr2002_single_input_module",
      "alias": "shenorr2002_single_input_module",
      "provenance": {
        "owned_path": "owned/models/shenorr2002_single_input_module"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.shenorr2002_single_input_module_state"
      ],
      "from": "shenorr2002_single_input_module.state"
    },
    {
      "to": [
        "visualisation.shenorr2002_single_input_module_summary"
      ],
      "from": "shenorr2002_single_input_module.summary"
    },
    {
      "to": [
        "visualisation.shenorr2002_single_input_module_species_labels"
      ],
      "from": "shenorr2002_single_input_module.species_labels"
    },
    {
      "to": [
        "visualisation.shenorr2002_single_input_module_input_regulator"
      ],
      "from": "shenorr2002_single_input_module.input_regulator"
    },
    {
      "to": [
        "visualisation.shenorr2002_single_input_module_target_gene_1"
      ],
      "from": "shenorr2002_single_input_module.target_gene_1"
    },
    {
      "to": [
        "visualisation.shenorr2002_single_input_module_target_gene_2"
      ],
      "from": "shenorr2002_single_input_module.target_gene_2"
    },
    {
      "to": [
        "visualisation.shenorr2002_single_input_module_target_gene_3"
      ],
      "from": "shenorr2002_single_input_module.target_gene_3"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Shen-Orr2002_Single_Input_Module. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

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