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Waugh2006 - Diabetic Wound Healing - Macrophage Dynamics Lab

About lab

This a model from the article: Macrophage dynamics in diabetic wound dealing. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagewaugh2006-diabetic-wound-healing-macrophage-dynamics-lab
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [],
    "outputs": [
      {
        "name": "unresolved_immune_observable_1",
        "maps_to": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.unresolved_immune_observable_1"
      },
      {
        "name": "phi_i",
        "maps_to": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.phi_i"
      },
      {
        "name": "phi_r",
        "maps_to": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.phi_r"
      },
      {
        "name": "unresolved_immune_observable_2",
        "maps_to": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.unresolved_immune_observable_2"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.species_labels"
      }
    ]
  },
  "title": "Waugh2006 - Diabetic Wound Healing - Macrophage Dynamics Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model",
      "alias": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model_state"
      ],
      "from": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model_summary"
      ],
      "from": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model_species_labels"
      ],
      "from": "immunology_sbml_waugh2006_diabetic_wound_healing_macrophage_dyna_biomd0000000679_model.species_labels"
    }
  ],
  "caveats": "No scientifically safe input was exposed in this pass: the bundled SBML did not provide a headline species initial value or meaningfully named constant/intervention parameter that could be surfaced without turning raw source symbols into unsupported biological claims.",
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This a model from the article: Macrophage dynamics in diabetic wound dealing. It can be used to explore immune response dynamics and compare pathway-level behavior across conditions.",
  "schema_version": "2.0"
}

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