About lab
To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. It can be used to explore systemsbiology tiemann2011 phenotypetransitions model1112150000 dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagetiemann2011-phenotypetransitions-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_tg_cyt",
"label": "Initial Tg Cyt",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.initial_tg_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_4`."
},
{
"name": "initial_model_state_fc",
"label": "Initial Model State Fc",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.initial_model_state_fc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_1`."
},
{
"name": "initial_ce_hdl",
"label": "Initial Ce Hdl",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.initial_ce_hdl",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_8`."
},
{
"name": "initial_ce_cyt",
"label": "Initial Ce Cyt",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.initial_ce_cyt",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_2`."
},
{
"name": "initial_ce_plasma",
"label": "Initial Ce Plasma",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.initial_ce_plasma",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_7`."
},
{
"name": "initial_tg_plasma",
"label": "Initial Tg Plasma",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.initial_tg_plasma",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `species_6`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.species_labels"
},
{
"name": "tg_cyt",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.tg_cyt"
},
{
"name": "model_state_fc",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.model_state_fc"
},
{
"name": "ce_hdl",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.ce_hdl"
},
{
"name": "ce_cyt",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.ce_cyt"
},
{
"name": "ce_plasma",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.ce_plasma"
},
{
"name": "tg_plasma",
"maps_to": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.tg_plasma"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Tiemann2011 Phenotypetransitions Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model",
"alias": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model_state"
],
"from": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model_summary"
],
"from": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model_species_labels"
],
"from": "systemsbiology_sbml_tiemann2011_phenotypetransitions_model1112150000_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "To the extent possible under law, all copyright and related or neighbouring rights to this encoded model have been dedicated to the public domain worldwide. It can be used to explore systemsbiology tiemann2011 phenotypetransitions model1112150000 dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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