BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Gardner2000 - genetic toggle switch in E.coli Lab

About lab

Curated microbiology lab for Gardner2000 - genetic toggle switch in E.coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.

Runtime

Duration10
Comms Step0.01

Runs

Total0
Completed0
Failed0

Metadata

Packagegardner2000-genetic-toggle-switch-in-e-coli-lab
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "iptg_inducer_level",
        "maps_to": "gardner2000_ecoli_toggle_switch.iptg_inducer_level"
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "gardner2000_ecoli_toggle_switch.state"
      },
      {
        "name": "summary",
        "maps_to": "gardner2000_ecoli_toggle_switch.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "gardner2000_ecoli_toggle_switch.species_labels"
      },
      {
        "name": "iptg_inducer",
        "maps_to": "gardner2000_ecoli_toggle_switch.iptg_inducer"
      },
      {
        "name": "first_toggle_repressor",
        "maps_to": "gardner2000_ecoli_toggle_switch.first_toggle_repressor"
      },
      {
        "name": "second_toggle_repressor",
        "maps_to": "gardner2000_ecoli_toggle_switch.second_toggle_repressor"
      }
    ]
  },
  "title": "Gardner2000 - genetic toggle switch in E.coli Lab",
  "models": [
    {
      "path": "owned/models/gardner2000_ecoli_toggle_switch",
      "alias": "gardner2000_ecoli_toggle_switch",
      "provenance": {
        "owned_path": "owned/models/gardner2000_ecoli_toggle_switch"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.gardner2000_ecoli_toggle_switch_state"
      ],
      "from": "gardner2000_ecoli_toggle_switch.state"
    },
    {
      "to": [
        "visualisation.gardner2000_ecoli_toggle_switch_summary"
      ],
      "from": "gardner2000_ecoli_toggle_switch.summary"
    },
    {
      "to": [
        "visualisation.gardner2000_ecoli_toggle_switch_species_labels"
      ],
      "from": "gardner2000_ecoli_toggle_switch.species_labels"
    },
    {
      "to": [
        "visualisation.gardner2000_ecoli_toggle_switch_iptg_inducer"
      ],
      "from": "gardner2000_ecoli_toggle_switch.iptg_inducer"
    },
    {
      "to": [
        "visualisation.gardner2000_ecoli_toggle_switch_first_toggle_repressor"
      ],
      "from": "gardner2000_ecoli_toggle_switch.first_toggle_repressor"
    },
    {
      "to": [
        "visualisation.gardner2000_ecoli_toggle_switch_second_toggle_repressor"
      ],
      "from": "gardner2000_ecoli_toggle_switch.second_toggle_repressor"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Curated microbiology lab for Gardner2000 - genetic toggle switch in E.coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.