About lab
Curated microbiology lab for Gardner2000 - genetic toggle switch in E.coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.
Runtime
Duration10
Comms Step0.01
Runs
Total0
Completed0
Failed0
Metadata
Packagegardner2000-genetic-toggle-switch-in-e-coli-lab
Created2026-05-15
Updated2026-05-15
microbiologysbmlbiomodels_ebifaithfultelluriumvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "iptg_inducer_level",
"maps_to": "gardner2000_ecoli_toggle_switch.iptg_inducer_level"
}
],
"outputs": [
{
"name": "state",
"maps_to": "gardner2000_ecoli_toggle_switch.state"
},
{
"name": "summary",
"maps_to": "gardner2000_ecoli_toggle_switch.summary"
},
{
"name": "species_labels",
"maps_to": "gardner2000_ecoli_toggle_switch.species_labels"
},
{
"name": "iptg_inducer",
"maps_to": "gardner2000_ecoli_toggle_switch.iptg_inducer"
},
{
"name": "first_toggle_repressor",
"maps_to": "gardner2000_ecoli_toggle_switch.first_toggle_repressor"
},
{
"name": "second_toggle_repressor",
"maps_to": "gardner2000_ecoli_toggle_switch.second_toggle_repressor"
}
]
},
"title": "Gardner2000 - genetic toggle switch in E.coli Lab",
"models": [
{
"path": "owned/models/gardner2000_ecoli_toggle_switch",
"alias": "gardner2000_ecoli_toggle_switch",
"provenance": {
"owned_path": "owned/models/gardner2000_ecoli_toggle_switch"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.gardner2000_ecoli_toggle_switch_state"
],
"from": "gardner2000_ecoli_toggle_switch.state"
},
{
"to": [
"visualisation.gardner2000_ecoli_toggle_switch_summary"
],
"from": "gardner2000_ecoli_toggle_switch.summary"
},
{
"to": [
"visualisation.gardner2000_ecoli_toggle_switch_species_labels"
],
"from": "gardner2000_ecoli_toggle_switch.species_labels"
},
{
"to": [
"visualisation.gardner2000_ecoli_toggle_switch_iptg_inducer"
],
"from": "gardner2000_ecoli_toggle_switch.iptg_inducer"
},
{
"to": [
"visualisation.gardner2000_ecoli_toggle_switch_first_toggle_repressor"
],
"from": "gardner2000_ecoli_toggle_switch.first_toggle_repressor"
},
{
"to": [
"visualisation.gardner2000_ecoli_toggle_switch_second_toggle_repressor"
],
"from": "gardner2000_ecoli_toggle_switch.second_toggle_repressor"
}
],
"runtime": {
"duration": 10,
"initial_inputs": {},
"communication_step": 0.01
},
"description": "Curated microbiology lab for Gardner2000 - genetic toggle switch in E.coli. The bundled SBML is executed directly through Tellurium and visualised with conservative, source-traceable labels.",
"schema_version": "2.0"
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