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Moore2004 - Li Mathematical Chronic Myelogenous Leukemia T Cell Lab

About lab

Source-faithful physiology lab for Moore, Li, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packagemoore2004-li-mathematical-chronic-myelogenous-leukemia-t-cell-la
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cell_population_c",
        "label": "Initial Cell Population C (source C)",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.initial_cell_population_c",
        "description": "Initial value for Cell Population C (source C). Maps to source symbol `C`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state.",
        "accepted_units": [
          "cells_per_microlitre"
        ]
      },
      {
        "name": "initial_cell_population_te",
        "label": "Initial Cell Population Te (source Te)",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.initial_cell_population_te",
        "description": "Initial value for Cell Population Te (source Te). Maps to source symbol `Te`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state.",
        "accepted_units": [
          "cells_per_microlitre"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.variable_labels"
      },
      {
        "name": "cell_population_c",
        "label": "Cell Population C (source C)",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.cell_population_c",
        "description": "Cell Population C (source C). Maps to source symbol `C`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state."
      },
      {
        "name": "cell_population_te",
        "label": "Cell Population Te (source Te)",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.cell_population_te",
        "description": "Cell Population Te (source Te). Maps to source symbol `Te`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state."
      },
      {
        "name": "cell_population_tn",
        "label": "Cell Population Tn (source Tn)",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.cell_population_tn",
        "description": "Cell Population Tn (source Tn). Maps to source symbol `Tn`. Units: cells_per_microlitre. Naming evidence: cell units identify a cell-population state."
      },
      {
        "name": "alpha_e",
        "label": "Alpha E",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.alpha_e",
        "description": "Alpha E. Maps to source symbol `alpha_e`. Units: first_order_rate_constant. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "alpha_n",
        "label": "Alpha N",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.alpha_n",
        "description": "Alpha N. Maps to source symbol `alpha_n`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "cmax",
        "label": "Cmax",
        "maps_to": "physiology_cellml_moore_li_2004_2d5_model.cmax",
        "description": "Cmax. Maps to source symbol `Cmax`. Units: cells_per_microlitre. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Moore2004 - Li Mathematical Chronic Myelogenous Leukemia T Cell Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_moore_li_2004_2d5_model",
      "alias": "physiology_cellml_moore_li_2004_2d5_model",
      "parameters": {
        "model_path": "data/moore_li_2004.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_moore_li_2004_2d5_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_moore_li_2004_2d5_model_state"
      ],
      "from": "physiology_cellml_moore_li_2004_2d5_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_moore_li_2004_2d5_model_summary"
      ],
      "from": "physiology_cellml_moore_li_2004_2d5_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_moore_li_2004_2d5_model_trajectory"
      ],
      "from": "physiology_cellml_moore_li_2004_2d5_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_moore_li_2004_2d5_model_variable_labels"
      ],
      "from": "physiology_cellml_moore_li_2004_2d5_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Moore, Li, 2004. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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