Physiome sineapproximat - Sine Approximations Lab

About lab

Physiome sineapproximat - Sine Approximations Lab

Scientific Source

Source type: PhysioMe CellML
Upstream ID: physiome:sine-approximations
Original URL: https://models.physiomeproject.org/workspace/sine-approximations
Bundled artifact: data/sine-approximations.cellml

The bundled CellML/SBML artifact remains the scientific source of truth. This cleanup does not rewrite equations, parameters, units, or initial values; it exposes selected source symbols with conservative user-facing names.

Public Interface

Source-backed inputs:

initial_sin2 (Sin2) maps to source symbol sin2; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
The simulator still uses an internal integration_step parameter from the model manifest; it is not exposed as a biological lab input.

Selected outputs:

state, summary, trajectory, and variable_labels remain available for traceability.
sin2 (Sin2) maps to source symbol sin2; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
k2_o_pi (K2 O Pi) maps to source symbol k2_oPi; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
k2_pi (K2 Pi) maps to source symbol k2Pi; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
k_pi_2 (K Pi 2) maps to source symbol kPi_2; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
k_pi_32 (K Pi 32) maps to source symbol kPi_32; units: dimensionless; evidence: source symbol, component, or units provide a direct public name.
model_parameter_k_pi (Model Parameter K Pi (source kPi)) maps to source symbol kPi; units: dimensionless; evidence: source symbol is dimensionless but lacks enough evidence for a biological label.

Ambiguous source symbols are intentionally given conservative names such as model_state_*, cell_population_*, or rate_constant_* rather than unsupported biological interpretations.

Visualisations

Visual scope: Selected source-variable trajectories; final observable ranking; source/runtime evidence table; scientific Q/A.

The visualisation renders a scientific Q/A table, selected source-variable trajectories, final observable values, and source/runtime evidence. The cards use runtime outputs from the core wrapper and suppress empty data.

Output Visualizations

01-physiome-sineapproximat-sine-approximations-lab-physiology-run-answer

02-selected-physiology-trajectories

03-selected-final-observable-values

04-source-and-runtime-evidence

Caveat

This validates source-faithful execution and Biosimulant wiring for source-model physiology; it does not claim clinical safety or full reproduction of every upstream figure.

Source-faithful physiology lab for Sine-Approximations. Public controls and outputs are mapped to real source symbols for source-model physiology.

Runtime

Duration0.01

Comms Step0.01

Settle Steps1

Runs

Total0

Completed0

Failed0

Metadata

Packagephysiome-sineapproximat-sine-approximations-lab

Created2026-05-23

Updated2026-05-23

physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_sin2",
        "label": "Initial Sin2",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.initial_sin2",
        "description": "Initial value for Sin2. Maps to source symbol `sin2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "dimensionless"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.variable_labels"
      },
      {
        "name": "sin2",
        "label": "Sin2",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.sin2",
        "description": "Sin2. Maps to source symbol `sin2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "k2_o_pi",
        "label": "K2 O Pi",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.k2_o_pi",
        "description": "K2 O Pi. Maps to source symbol `k2_oPi`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "k2_pi",
        "label": "K2 Pi",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.k2_pi",
        "description": "K2 Pi. Maps to source symbol `k2Pi`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "k_pi_2",
        "label": "K Pi 2",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.k_pi_2",
        "description": "K Pi 2. Maps to source symbol `kPi_2`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "k_pi_32",
        "label": "K Pi 32",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.k_pi_32",
        "description": "K Pi 32. Maps to source symbol `kPi_32`. Units: dimensionless. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "model_parameter_k_pi",
        "label": "Model Parameter K Pi (source kPi)",
        "maps_to": "physiology_cellml_sine_approximations_sineapproximations_model.model_parameter_k_pi",
        "description": "Model Parameter K Pi (source kPi). Maps to source symbol `kPi`. Units: dimensionless. Naming evidence: source symbol is dimensionless but lacks enough evidence for a biological label."
      }
    ]
  },
  "title": "Physiome sineapproximat - Sine Approximations Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_sine_approximations_sineapproximations_model",
      "alias": "physiology_cellml_sine_approximations_sineapproximations_model",
      "parameters": {
        "model_path": "data/sine-approximations.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_sine_approximations_sineapproximations_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_sine_approximations_sineapproximations_model_state"
      ],
      "from": "physiology_cellml_sine_approximations_sineapproximations_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sine_approximations_sineapproximations_model_summary"
      ],
      "from": "physiology_cellml_sine_approximations_sineapproximations_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sine_approximations_sineapproximations_model_trajectory"
      ],
      "from": "physiology_cellml_sine_approximations_sineapproximations_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_sine_approximations_sineapproximations_model_variable_labels"
      ],
      "from": "physiology_cellml_sine_approximations_sineapproximations_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Sine-Approximations. Public controls and outputs are mapped to real source symbols for source-model physiology.",
  "schema_version": "2.0"
}

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