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Feist2006 Methanogenesis Optih2 Co2 Lab

About lab

This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagefeist2006-methanogenesis-optih2-co2-lab
Created2026-05-17
Updated2026-05-17
generegulationsystemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_glycolaldehyde",
        "label": "Initial Glycolaldehyde",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.initial_glycolaldehyde",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_gcald_c_`."
      },
      {
        "name": "initial_glycolaldehyde_2",
        "label": "Initial Glycolaldehyde 2",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.initial_glycolaldehyde_2",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_gcald_e_`."
      },
      {
        "name": "initial_d_td_pglucose",
        "label": "Initial D Td Pglucose",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.initial_d_td_pglucose",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_dtdpglu_c_`."
      },
      {
        "name": "initial_d_tdp_4_dehydro_6_deoxy_d_glucose",
        "label": "Initial D Tdp 4 Dehydro 6 Deoxy D Glucose",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.initial_d_tdp_4_dehydro_6_deoxy_d_glucose",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_dtdp4d6dg_c_`."
      },
      {
        "name": "initial_d_atp",
        "label": "Initial D ATP",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.initial_d_atp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_datp_c_`."
      },
      {
        "name": "initial_d_adp",
        "label": "Initial D ADP",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.initial_d_adp",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `M_dadp_c_`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.species_labels"
      },
      {
        "name": "glycolaldehyde",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.glycolaldehyde"
      },
      {
        "name": "glycolaldehyde_2",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.glycolaldehyde_2"
      },
      {
        "name": "d_td_pglucose",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.d_td_pglucose"
      },
      {
        "name": "d_tdp_4_dehydro_6_deoxy_d_glucose",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.d_tdp_4_dehydro_6_deoxy_d_glucose"
      },
      {
        "name": "d_atp",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.d_atp"
      },
      {
        "name": "d_adp",
        "maps_to": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.d_adp"
      }
    ]
  },
  "tags": [
    "generegulation",
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Feist2006 Methanogenesis Optih2 Co2 Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model",
      "alias": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model_state"
      ],
      "from": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model_summary"
      ],
      "from": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model_species_labels"
      ],
      "from": "systemsbiology_sbml_feist2006_methanogenesis_optih2_co2_model5662398146_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "This model originates from BioModels Database: A Database of Annotated Published Models (http://www.ebi.ac.uk/biomodels/). It is copyright (c) 2005-2011 The BioModels.net Team.",
  "schema_version": "2.0"
}

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