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Ni2017 - Human Atrial Lab

About lab

Source-faithful physiology lab for Ni et al. 2017 Human atrial model. Public controls and outputs are mapped to real source symbols for electrophysiology.

Runtime

Duration0.01
Comms Step0.01
Settle Steps1

Runs

Total0
Completed0
Failed0

Metadata

Packageni2017-human-atrial-lab
Created2026-05-23
Updated2026-05-23
physiologycellmlphysiomefaithfulvisualisationother

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_membrane_voltage",
        "label": "Initial Membrane Voltage",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.initial_membrane_voltage",
        "description": "Initial value for Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mV"
        ]
      },
      {
        "name": "initial_ca_sri",
        "label": "Initial Ca Sri",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.initial_ca_sri",
        "description": "Initial value for Ca Sri. Maps to source symbol `Ca_SRi`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name.",
        "accepted_units": [
          "mM"
        ]
      }
    ],
    "outputs": [
      {
        "name": "state",
        "label": "Selected Source State",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.state"
      },
      {
        "name": "summary",
        "label": "Simulation Summary",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.summary"
      },
      {
        "name": "trajectory",
        "label": "Source Trajectory",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.trajectory"
      },
      {
        "name": "variable_labels",
        "label": "Observable Labels",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.variable_labels"
      },
      {
        "name": "membrane_voltage",
        "label": "Membrane Voltage",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.membrane_voltage",
        "description": "Membrane Voltage. Maps to source symbol `V`. Units: mV. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_sri",
        "label": "Ca Sri",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.ca_sri",
        "description": "Ca Sri. Maps to source symbol `Ca_SRi`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_srss",
        "label": "Ca Srss",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.ca_srss",
        "description": "Ca Srss. Maps to source symbol `Ca_SRss`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "ca_ss",
        "label": "Ca Ss",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.ca_ss",
        "description": "Ca Ss. Maps to source symbol `Ca_ss`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_calcium",
        "label": "Intracellular Calcium",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.intracellular_calcium",
        "description": "Intracellular Calcium. Maps to source symbol `Ca_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      },
      {
        "name": "intracellular_sodium",
        "label": "Intracellular Sodium",
        "maps_to": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.intracellular_sodium",
        "description": "Intracellular Sodium. Maps to source symbol `Na_i`. Units: mM. Naming evidence: source symbol, component, or units provide a direct public name."
      }
    ]
  },
  "title": "Ni2017 - Human Atrial Lab",
  "models": [
    {
      "path": "owned/models/physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model",
      "alias": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model",
      "parameters": {
        "model_path": "data/ni_2017.cellml",
        "integration_step": 0.01
      },
      "provenance": {
        "owned_path": "owned/models/physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model_state"
      ],
      "from": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.state"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model_summary"
      ],
      "from": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.summary"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model_trajectory"
      ],
      "from": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.trajectory"
    },
    {
      "to": [
        "visualisation.physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model_variable_labels"
      ],
      "from": "physiology_cellml_ni_et_al_2017_human_atrial_model_5b0_model.variable_labels"
    }
  ],
  "runtime": {
    "duration": 0.01,
    "settle_steps": 1,
    "initial_inputs": {},
    "communication_step": 0.01
  },
  "description": "Source-faithful physiology lab for Ni et al. 2017 Human atrial model. Public controls and outputs are mapped to real source symbols for electrophysiology.",
  "schema_version": "2.0"
}

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