About lab
This is model is according to the paper Toward a detailed computational model for the mammalian circadian clock In this model interlocked negative and positive regulation of Per,Cry,Bmal,REV-ERBalpha. It can be used to explore systemsbiology leloup2003 circclock ld rev erbalpha dynamics and compare simulation behavior across conditions.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packageleloup2003-circclock-ld-rev-erbalpha-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_model_state_rn",
"label": "Initial Model State Rn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.initial_model_state_rn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Rn`."
},
{
"name": "initial_model_state_rc",
"label": "Initial Model State Rc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.initial_model_state_rc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Rc`."
},
{
"name": "initial_model_state_pcp",
"label": "Initial Model State Pcp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.initial_model_state_pcp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pcp`."
},
{
"name": "initial_model_state_pc",
"label": "Initial Model State Pc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.initial_model_state_pc",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `Pc`."
},
{
"name": "initial_p_cnp",
"label": "Initial P Cnp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.initial_p_cnp",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PCnp`."
},
{
"name": "initial_p_cn",
"label": "Initial P Cn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.initial_p_cn",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `PCn`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.species_labels"
},
{
"name": "model_state_rn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.model_state_rn"
},
{
"name": "model_state_rc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.model_state_rc"
},
{
"name": "pcp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.pcp"
},
{
"name": "model_state_pc",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.model_state_pc"
},
{
"name": "p_cnp",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.p_cnp"
},
{
"name": "p_cn",
"maps_to": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.p_cn"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Leloup2003 Circclock Ld Rev Erbalpha Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model",
"alias": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
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],
"from": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.state"
},
{
"to": [
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],
"from": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.summary"
},
{
"to": [
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],
"from": "systemsbiology_sbml_leloup2003_circclock_ld_rev_erbalpha_biomd0000000083_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "This is model is according to the paper Toward a detailed computational model for the mammalian circadian clock In this model interlocked negative and positive regulation of Per,Cry,Bmal,REV-ERBalpha. It can be used to explore systemsbiology leloup2003 circclock ld rev erbalpha dynamics and compare simulation behavior across conditions.",
"schema_version": "2.0"
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