About lab
SBML creators: Armando Reyes-Palomares * , Raul Montañez *, Carlos Rodriguez-Caso +, Francisca Sanchez-Jimenez * , Miguel A. Medina * * ProCel Group, Department of Molecular Biology and Biochemistry,.
Runtime
Duration1
Comms Step0.1
Runs
Total0
Completed0
Failed0
Metadata
Packagemontanez2008-arginine-catabolism-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation
Manifest
{
"io": {
"inputs": [
{
"name": "initial_arginine_ex",
"label": "Initial Arginine Ex",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.initial_arginine_ex",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ARGex`."
},
{
"name": "initial_ornithine",
"label": "Initial Ornithine",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.initial_ornithine",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ORN`."
},
{
"name": "initial_arginine_in",
"label": "Initial Arginine In",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.initial_arginine_in",
"description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ARGin`."
}
],
"outputs": [
{
"name": "state",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.state"
},
{
"name": "summary",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.summary"
},
{
"name": "species_labels",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.species_labels"
},
{
"name": "arginine_ex",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.arginine_ex"
},
{
"name": "ornithine",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.ornithine"
},
{
"name": "arginine_in",
"maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.arginine_in"
}
]
},
"tags": [
"systemsbiology",
"sbml",
"biomodels_ebi",
"faithful",
"curated"
],
"title": "Montanez2008 Arginine Catabolism Lab",
"models": [
{
"path": "owned/models/systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model",
"alias": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model",
"provenance": {
"owned_path": "owned/models/systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model"
}
},
{
"path": "owned/models/visualisation",
"alias": "visualisation",
"provenance": {
"owned_path": "owned/models/visualisation"
}
}
],
"wiring": [
{
"to": [
"visualisation.systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model_state"
],
"from": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.state"
},
{
"to": [
"visualisation.systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model_summary"
],
"from": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.summary"
},
{
"to": [
"visualisation.systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model_species_labels"
],
"from": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.species_labels"
}
],
"runtime": {
"duration": 1,
"initial_inputs": {},
"communication_step": 0.1
},
"description": "SBML creators: Armando Reyes-Palomares * , Raul Montañez *, Carlos Rodriguez-Caso +, Francisca Sanchez-Jimenez * , Miguel A. Medina * * ProCel Group, Department of Molecular Biology and Biochemistry,.",
"schema_version": "2.0"
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