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Montanez2008 Arginine Catabolism Lab

About lab

SBML creators: Armando Reyes-Palomares * , Raul Montañez *, Carlos Rodriguez-Caso +, Francisca Sanchez-Jimenez * , Miguel A. Medina * * ProCel Group, Department of Molecular Biology and Biochemistry,.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packagemontanez2008-arginine-catabolism-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_arginine_ex",
        "label": "Initial Arginine Ex",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.initial_arginine_ex",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ARGex`."
      },
      {
        "name": "initial_ornithine",
        "label": "Initial Ornithine",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.initial_ornithine",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ORN`."
      },
      {
        "name": "initial_arginine_in",
        "label": "Initial Arginine In",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.initial_arginine_in",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `ARGin`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.species_labels"
      },
      {
        "name": "arginine_ex",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.arginine_ex"
      },
      {
        "name": "ornithine",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.ornithine"
      },
      {
        "name": "arginine_in",
        "maps_to": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.arginine_in"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Montanez2008 Arginine Catabolism Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model",
      "alias": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model_state"
      ],
      "from": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model_summary"
      ],
      "from": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model_species_labels"
      ],
      "from": "systemsbiology_sbml_monta_ez2008_arginine_catabolism_biomd0000000191_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "SBML creators: Armando Reyes-Palomares * , Raul Montañez *, Carlos Rodriguez-Caso +, Francisca Sanchez-Jimenez * , Miguel A. Medina * * ProCel Group, Department of Molecular Biology and Biochemistry,.",
  "schema_version": "2.0"
}

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