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Miao2014 - Dynamics and migratory pathways of virus-specific antibody-secreting cell populations Lab

About lab

This model is from the paper available at http://www.ncbi.nlm.nih.gov/pubmed/25171166. The original model contains time-varying parameters which are describedby a smoothing spline.

Runtime

Duration10
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagemiao2014-dynamics-and-migratory-pathways-of-virus-specific-antib
Created2026-05-15
Updated2026-05-15
immunologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_cell_spleen",
        "label": "Initial Cell Spleen",
        "units": "native source value",
        "default": 3400,
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.initial_cell_spleen",
        "description": "Initial Cell Spleen. Sets the initial value of bundled SBML species `s1`."
      },
      {
        "name": "initial_cell_mln",
        "label": "Initial Cell Mln",
        "units": "native source value",
        "default": 1100,
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.initial_cell_mln",
        "description": "Initial Cell Mln. Sets the initial value of bundled SBML species `s2`."
      },
      {
        "name": "initial_cell_lung",
        "label": "Initial Cell Lung",
        "units": "native source value",
        "default": 18,
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.initial_cell_lung",
        "description": "Initial Cell Lung. Sets the initial value of bundled SBML species `s3`."
      },
      {
        "name": "initial_unresolved_infection_observable_1",
        "label": "Initial Unresolved Infection Observable 1",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.initial_unresolved_infection_observable_1",
        "description": "Initial Unresolved Infection Observable 1. Sets the initial value of bundled SBML species `s4`."
      },
      {
        "name": "initial_unresolved_infection_observable_2",
        "label": "Initial Unresolved Infection Observable 2",
        "units": "native source value",
        "default": 0,
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.initial_unresolved_infection_observable_2",
        "description": "Initial Unresolved Infection Observable 2. Sets the initial value of bundled SBML species `s5`."
      }
    ],
    "outputs": [
      {
        "name": "cell_spleen",
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.cell_spleen"
      },
      {
        "name": "cell_mln",
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.cell_mln"
      },
      {
        "name": "cell_lung",
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.cell_lung"
      },
      {
        "name": "unresolved_infection_observable_1",
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.unresolved_infection_observable_1"
      },
      {
        "name": "unresolved_infection_observable_2",
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.unresolved_infection_observable_2"
      },
      {
        "name": "state",
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.state"
      },
      {
        "name": "summary",
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.species_labels"
      }
    ]
  },
  "title": "Miao2014 - Dynamics and migratory pathways of virus-specific antibody-secreting cell populations Lab",
  "models": [
    {
      "path": "owned/models/immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model",
      "alias": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model",
      "provenance": {
        "owned_path": "owned/models/immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model_state"
      ],
      "from": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.state"
    },
    {
      "to": [
        "visualisation.immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model_summary"
      ],
      "from": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.summary"
    },
    {
      "to": [
        "visualisation.immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model_species_labels"
      ],
      "from": "immunology_sbml_miao2014_dynamics_and_migratory_pathways_of_viru_model1411130000_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This model is from the paper available at http://www.ncbi.nlm.nih.gov/pubmed/25171166. The original model contains time-varying parameters which are describedby a smoothing spline.",
  "schema_version": "2.0"
}

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