Li2008 - Caulobacter Cell Cycle Lab

{
  "io": {
    "inputs": [
      {
        "name": "ks_dna_a",
        "label": "Ks,DnaA",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ks_dna_a",
        "description": "Controls Ks,DnaA in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ks_dna_a`."
      },
      {
        "name": "kd_dna_a",
        "label": "Kd,DnaA",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.kd_dna_a",
        "description": "Controls Kd,DnaA in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.kd_dna_a`."
      },
      {
        "name": "ja_dna_active_ctr_a",
        "label": "Ja,DNA Active CtrA",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ja_dna_active_ctr_a",
        "description": "Controls Ja,DNA Active CtrA in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ja_dna_active_ctr_a`."
      },
      {
        "name": "theta_dna_a",
        "label": "Theta DnaA",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.theta_dna_a",
        "description": "Controls Theta DnaA in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.theta_dna_a`."
      },
      {
        "name": "ji_dna_active_gcr_a",
        "label": "Ji,DNA Active GcrA",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ji_dna_active_gcr_a",
        "description": "Controls Ji,DNA Active GcrA in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ji_dna_active_gcr_a`."
      }
    ],
    "outputs": [
      {
        "name": "ctr_a_cell_cycle_regulator",
        "label": "CtrA cell-cycle regulator",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ctr_a_cell_cycle_regulator",
        "description": "Tracks CtrA cell-cycle regulator in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ctr_a_cell_cycle_regulator`."
      },
      {
        "name": "gcr_a_transcriptional_regulator",
        "label": "GcrA transcriptional regulator",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.gcr_a_transcriptional_regulator",
        "description": "Tracks GcrA transcriptional regulator in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.gcr_a_transcriptional_regulator`."
      },
      {
        "name": "dna_a_replication_initiator",
        "label": "DnaA replication initiator",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.dna_a_replication_initiator",
        "description": "Tracks DnaA replication initiator in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.dna_a_replication_initiator`."
      },
      {
        "name": "fts_z_division_marker",
        "label": "FtsZ division marker",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.fts_z_division_marker",
        "description": "Tracks FtsZ division marker in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.fts_z_division_marker`."
      },
      {
        "name": "z_ring",
        "label": "Z-ring",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.z_ring",
        "description": "Tracks Z-ring in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.z_ring`."
      },
      {
        "name": "div_k_polarity_regulator",
        "label": "DivK polarity regulator",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.div_k_polarity_regulator",
        "description": "Tracks DivK polarity regulator in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.div_k_polarity_regulator`."
      },
      {
        "name": "phosphorylated_div_k",
        "label": "Phosphorylated DivK",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.phosphorylated_div_k",
        "description": "Tracks Phosphorylated DivK in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.phosphorylated_div_k`."
      },
      {
        "name": "model_state_i",
        "label": "Model state I",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.model_state_i",
        "description": "Tracks Model state I in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.model_state_i`."
      },
      {
        "name": "ccr_model_state_m",
        "label": "Ccr Model state M",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ccr_model_state_m",
        "description": "Tracks Ccr Model state M in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.ccr_model_state_m`."
      },
      {
        "name": "hcori",
        "label": "Hcori",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.hcori",
        "description": "Tracks Hcori in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.hcori`."
      },
      {
        "name": "hctr_a",
        "label": "Hctr A",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.hctr_a",
        "description": "Tracks Hctr A in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.hctr_a`."
      },
      {
        "name": "hccr_model_state_m",
        "label": "Hccr Model state M",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.hccr_model_state_m",
        "description": "Tracks Hccr Model state M in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.hccr_model_state_m`."
      },
      {
        "name": "hfts",
        "label": "Hfts",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.hfts",
        "description": "Tracks Hfts in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.hfts`."
      },
      {
        "name": "replication_initiation_state",
        "label": "Replication initiation state",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.replication_initiation_state",
        "description": "Tracks Replication initiation state in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.replication_initiation_state`."
      },
      {
        "name": "cell_elongation_state",
        "label": "Cell elongation state",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.cell_elongation_state",
        "description": "Tracks Cell elongation state in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.cell_elongation_state`."
      },
      {
        "name": "dna_replication_state",
        "label": "DNA replication state",
        "maps_to": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.dna_replication_state",
        "description": "Tracks DNA replication state in the lab model via `cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.dna_replication_state`."
      }
    ]
  },
  "title": "Li2008 - Caulobacter Cell Cycle Lab",
  "models": [
    {
      "path": "owned/models/cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model",
      "alias": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model",
      "provenance": {
        "owned_path": "owned/models/cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model_state"
      ],
      "from": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.state"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model_summary"
      ],
      "from": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.summary"
    },
    {
      "to": [
        "visualisation.cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model_species_labels"
      ],
      "from": "cellcycle_sbml_li2008_caulobacter_cell_cycle_biomd0000000718_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 10,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "Single-model lab wrapper for Li2008 - Caulobacter Cell Cycle. This a model from the article: A Quantitative Study of the Division Cycle of Caulobacter crescentus Stalked Cells. Shenghua Li, Paul Brazhnik, Bruno Sobral, John J.",
  "schema_version": "2.0"
}