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Chaudhury2020 - First order expansion model of CAR-T cell and tumour kinetics Lab

About lab

This ordinary differential equation model of the cellular kinetics and pharmacodynamics of CAR-T cell therapy is described in the publication:Chaudhury, A., Zhu, X., Chu, L., Goliaei, A., June, C., Ke. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.

Runtime

Duration8.5
Comms Step1

Runs

Total0
Completed0
Failed0

Metadata

Packagechaudhury2020-first-order-expansion-model-of-car-t-cell-and-tumo
Created2026-05-16
Updated2026-05-16
biomodels_ebicar-tcurateddrug-responsefaithfulimmunologyimmunotherapyoncologypharmacologyphysiologysbmlsystemsbiologytumor-growthvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_car_t_cells",
        "label": "CAR-T Cells",
        "units": "native SBML value",
        "default": 10,
        "maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.initial_car_t_cells",
        "description": "Initial CAR-T Cells. Sets the initial value of bundled SBML symbol `CAR_T_cells`."
      },
      {
        "name": "initial_tumor_burden",
        "label": "Tumor Burden",
        "units": "native SBML value",
        "default": 900.000000000001,
        "maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.initial_tumor_burden",
        "description": "Initial Tumor Burden. Sets the initial value of bundled SBML symbol `U`."
      }
    ],
    "outputs": [
      {
        "name": "car_t_cells",
        "maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.car_t_cells",
        "description": "CAR-T Cells observable. Maps to SBML symbol `CAR_T_cells`."
      },
      {
        "name": "tumor_burden",
        "maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.tumor_burden",
        "description": "Tumor Burden observable. Maps to SBML symbol `U`."
      },
      {
        "name": "state",
        "maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.state",
        "description": "Full raw SBML observable record for reproducibility and downstream visualisation."
      },
      {
        "name": "summary",
        "maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.summary",
        "description": "Change and peak summary across the simulated SBML observables."
      },
      {
        "name": "species_labels",
        "maps_to": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.species_labels",
        "description": "Mapping from selected raw SBML observable symbols to display labels."
      }
    ]
  },
  "tags": [
    "biomodels_ebi",
    "car-t",
    "curated",
    "drug-response",
    "faithful",
    "immunology",
    "immunotherapy",
    "oncology",
    "pharmacology",
    "physiology",
    "sbml",
    "systemsbiology",
    "tumor-growth"
  ],
  "title": "Chaudhury2020 - First order expansion model of CAR-T cell and tumour kinetics Lab",
  "models": [
    {
      "path": "owned/models/oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model",
      "alias": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model",
      "provenance": {
        "owned_path": "owned/models/oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model_state"
      ],
      "from": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.state"
    },
    {
      "to": [
        "visualisation.oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model_summary"
      ],
      "from": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.summary"
    },
    {
      "to": [
        "visualisation.oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model_species_labels"
      ],
      "from": "oncology_sbml_chaudhury2020_first_order_expansion_model_of_car_model2109110005_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 8.5,
    "initial_inputs": {},
    "communication_step": 1
  },
  "description": "This ordinary differential equation model of the cellular kinetics and pharmacodynamics of CAR-T cell therapy is described in the publication:Chaudhury, A., Zhu, X., Chu, L., Goliaei, A., June, C., Ke. It can be used to explore tumor-related dynamics and compare treatment-response behavior across conditions.",
  "schema_version": "2.0"
}

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