BiosimulantBiosimulant
Docs
Search labs...
Sign inGet Started

Verma2016 Ca Signal Propagation Along Hepatocyte Cords Lab

About lab

Verma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords This model is described in the article: Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords. It can be used to explore systemsbiology verma2016 ca 2 signal propagation dynamics and compare simulation behavior across conditions.

Runtime

Duration1
Comms Step0.1

Runs

Total0
Completed0
Failed0

Metadata

Packageverma2016-ca-signal-propagation-along-hepatocyte-cords-lab
Created2026-05-17
Updated2026-05-17
systemsbiologysbmlbiomodels_ebifaithfulcuratedvisualisation

Manifest

{
  "io": {
    "inputs": [
      {
        "name": "initial_total_intracellular_store_ca2_content_ca_t_9",
        "label": "Initial Total Intracellular Store CA2 Content Ca T 9",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_9",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_9`."
      },
      {
        "name": "initial_total_intracellular_store_ca2_content_ca_t_8",
        "label": "Initial Total Intracellular Store CA2 Content Ca T 8",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_8",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_8`."
      },
      {
        "name": "initial_total_intracellular_store_ca2_content_ca_t_7",
        "label": "Initial Total Intracellular Store CA2 Content Ca T 7",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_7",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_7`."
      },
      {
        "name": "initial_total_intracellular_store_ca2_content_ca_t_6",
        "label": "Initial Total Intracellular Store CA2 Content Ca T 6",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_6",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_6`."
      },
      {
        "name": "initial_total_intracellular_store_ca2_content_ca_t_5",
        "label": "Initial Total Intracellular Store CA2 Content Ca T 5",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_5",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_5`."
      },
      {
        "name": "initial_total_intracellular_store_ca2_content_ca_t_4",
        "label": "Initial Total Intracellular Store CA2 Content Ca T 4",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.initial_total_intracellular_store_ca2_content_ca_t_4",
        "description": "Source state initial condition exposed as a model-specific control because no explicit intervention parameter is identifiable. Maps to SBML symbol `CaT_4`."
      }
    ],
    "outputs": [
      {
        "name": "state",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.state"
      },
      {
        "name": "summary",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.summary"
      },
      {
        "name": "species_labels",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.species_labels"
      },
      {
        "name": "total_intracellular_store_ca2_content_ca_t_9",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_9"
      },
      {
        "name": "total_intracellular_store_ca2_content_ca_t_8",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_8"
      },
      {
        "name": "total_intracellular_store_ca2_content_ca_t_7",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_7"
      },
      {
        "name": "total_intracellular_store_ca2_content_ca_t_6",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_6"
      },
      {
        "name": "total_intracellular_store_ca2_content_ca_t_5",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_5"
      },
      {
        "name": "total_intracellular_store_ca2_content_ca_t_4",
        "maps_to": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.total_intracellular_store_ca2_content_ca_t_4"
      }
    ]
  },
  "tags": [
    "systemsbiology",
    "sbml",
    "biomodels_ebi",
    "faithful",
    "curated"
  ],
  "title": "Verma2016 Ca Signal Propagation Along Hepatocyte Cords Lab",
  "models": [
    {
      "path": "owned/models/systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model",
      "alias": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model",
      "provenance": {
        "owned_path": "owned/models/systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model"
      }
    },
    {
      "path": "owned/models/visualisation",
      "alias": "visualisation",
      "provenance": {
        "owned_path": "owned/models/visualisation"
      }
    }
  ],
  "wiring": [
    {
      "to": [
        "visualisation.systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model_state"
      ],
      "from": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.state"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model_summary"
      ],
      "from": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.summary"
    },
    {
      "to": [
        "visualisation.systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model_species_labels"
      ],
      "from": "systemsbiology_sbml_verma2016_ca_2_signal_propagation_along_hepatocy_biomd0000000834_model.species_labels"
    }
  ],
  "runtime": {
    "duration": 1,
    "initial_inputs": {},
    "communication_step": 0.1
  },
  "description": "Verma2016 - Ca(2+) Signal Propagation Along Hepatocyte Cords This model is described in the article: Computational Modeling of Spatiotemporal Ca(2+) Signal Propagation Along Hepatocyte Cords. It can be used to explore systemsbiology verma2016 ca 2 signal propagation dynamics and compare simulation behavior across conditions.",
  "schema_version": "2.0"
}

Sign in to start your own run. Public-lab history stays visible here.

Select a run from History to view its results.