About lab
End-to-end shear-stress driven mechanotransduction. Composes the calcium-influx submodel with the NO-production submodel by wiring the cytosolic calcium output of the first into the cytosolic calcium input of the second. Single experimental knob: stimulus_intensity.
Runtime
Duration600
Comms Step10
Runs
Total3
Completed2
Failed1
Metadata
Packagekoo2013-shear-to-no
Created2026-05-04
Updated2026-06-13
biomechanicsendothelialshear-stressmechanotransductioncalciumsbmlbiomodels_ebifaithfulnitric-oxidevisualisationkoo2013other
Manifest
{
"io": {
"inputs": [
{
"name": "stimulus_intensity",
"maps_to": "calcium_influx.stimulus_intensity"
},
{
"name": "integration_step",
"maps_to": "calcium_influx.integration_step"
}
],
"outputs": [
{
"name": "cytosolic_calcium",
"maps_to": "calcium_influx.cytosolic_calcium"
},
{
"name": "ip3",
"maps_to": "calcium_influx.ip3"
},
{
"name": "active_eNOS",
"maps_to": "no_production.active_eNOS"
},
{
"name": "nitric_oxide",
"maps_to": "no_production.nitric_oxide"
},
{
"name": "calcium_influx_state",
"maps_to": "calcium_influx.state"
},
{
"name": "no_production_state",
"maps_to": "no_production.state"
}
]
},
"title": "Koo2013 Shear-to-NO Composed Pathway",
"models": [
{
"path": "models/calcium-influx",
"alias": "calcium_influx"
},
{
"path": "models/no-production",
"alias": "no_production"
},
{
"path": "models/visualisation",
"alias": "visualisation"
}
],
"wiring": [
{
"to": [
"no_production.cytosolic_calcium",
"visualisation.calcium_influx_cytosolic_calcium"
],
"from": "calcium_influx.cytosolic_calcium"
},
{
"to": [
"visualisation.calcium_influx_ip3"
],
"from": "calcium_influx.ip3"
},
{
"to": [
"visualisation.no_production_active_eNOS"
],
"from": "no_production.active_eNOS"
},
{
"to": [
"visualisation.no_production_nitric_oxide"
],
"from": "no_production.nitric_oxide"
},
{
"to": [
"visualisation.calcium_influx_state"
],
"from": "calcium_influx.state"
},
{
"to": [
"visualisation.calcium_influx_summary"
],
"from": "calcium_influx.summary"
},
{
"to": [
"visualisation.no_production_state"
],
"from": "no_production.state"
},
{
"to": [
"visualisation.no_production_summary"
],
"from": "no_production.summary"
}
],
"package": "koo2013-shear-to-no",
"runtime": {
"duration": 600,
"initial_inputs": {},
"communication_step": 10
},
"version": "1.0.0",
"description": "End-to-end shear-stress driven mechanotransduction. Composes the calcium-influx submodel with the NO-production submodel by wiring the cytosolic calcium output of the first into the cytosolic calcium input of the second. Single experimental knob: stimulus_intensity.",
"schema_version": "2.0"
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