About lab
End-to-end shear-stress driven mechanotransduction. Composes the calcium-influx submodel with the NO-production submodel by wiring the cytosolic calcium output of the first into the cytosolic calcium input of the second. Single experimental knob: stimulus_intensity.
Runtime
Duration600
Comms Step10
Runs
Total3
Completed2
Failed1
Metadata
Packagekoo2013-shear-to-no
Created2026-05-04
Updated2026-06-13
biomechanicsendothelialshear-stressmechanotransductioncalciumsbmlbiomodels_ebifaithfulnitric-oxidevisualisationkoo2013other
Manifest
{
"description": "End-to-end shear-stress driven mechanotransduction. Composes the calcium-influx submodel with the NO-production submodel by wiring the cytosolic calcium output of the first into the cytosolic calcium input of the second. Single experimental knob: stimulus_intensity.",
"io": {
"inputs": [
{
"maps_to": "calcium_influx.stimulus_intensity",
"name": "stimulus_intensity"
},
{
"maps_to": "calcium_influx.integration_step",
"name": "integration_step"
}
],
"outputs": [
{
"maps_to": "calcium_influx.cytosolic_calcium",
"name": "cytosolic_calcium"
},
{
"maps_to": "calcium_influx.ip3",
"name": "ip3"
},
{
"maps_to": "no_production.active_eNOS",
"name": "active_eNOS"
},
{
"maps_to": "no_production.nitric_oxide",
"name": "nitric_oxide"
},
{
"maps_to": "calcium_influx.state",
"name": "calcium_influx_state"
},
{
"maps_to": "no_production.state",
"name": "no_production_state"
}
]
},
"models": [
{
"alias": "calcium_influx",
"path": "models/calcium-influx"
},
{
"alias": "no_production",
"path": "models/no-production"
},
{
"alias": "visualisation",
"path": "models/visualisation"
}
],
"package": "koo2013-shear-to-no",
"runtime": {
"communication_step": 10,
"duration": 600,
"initial_inputs": {}
},
"schema_version": "2.0",
"title": "Koo2013 Shear-to-NO Composed Pathway",
"version": "1.0.0",
"wiring": [
{
"from": "calcium_influx.cytosolic_calcium",
"to": [
"no_production.cytosolic_calcium",
"visualisation.calcium_influx_cytosolic_calcium"
]
},
{
"from": "calcium_influx.ip3",
"to": [
"visualisation.calcium_influx_ip3"
]
},
{
"from": "no_production.active_eNOS",
"to": [
"visualisation.no_production_active_eNOS"
]
},
{
"from": "no_production.nitric_oxide",
"to": [
"visualisation.no_production_nitric_oxide"
]
},
{
"from": "calcium_influx.state",
"to": [
"visualisation.calcium_influx_state"
]
},
{
"from": "calcium_influx.summary",
"to": [
"visualisation.calcium_influx_summary"
]
},
{
"from": "no_production.state",
"to": [
"visualisation.no_production_state"
]
},
{
"from": "no_production.summary",
"to": [
"visualisation.no_production_summary"
]
}
]
}Sign in to start your own run. Public-lab history stays visible here.
Python error: incompatible input profiles: source (scalar, float64, None, None) does not match any accepted input profile
Logs
No logs yet.